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  5. Sam_g30316

Sam_g30316


Description : component *(VPS2/CHMP2) of ESCRT-III complex & original description: none


Gene families : OG0003140 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003140_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g30316

Target Alias Description ECC score Gene Family Method Actions
Aev_g38221 VPS2.3 component *(VPS2/CHMP2) of ESCRT-III complex & original... 0.02 OrthoFinder output from all 47 species
Als_g11633 VPS2.3 component *(VPS2/CHMP2) of ESCRT-III complex & original... 0.06 OrthoFinder output from all 47 species
Aspi01Gene71707.t1 VPS2.3, Aspi01Gene71707 component *(VPS2/CHMP2) of ESCRT-III complex & original... 0.03 OrthoFinder output from all 47 species
Cre17.g735400 VPS2.3 Vesicle trafficking.endomembrane trafficking.ESCRT... 0.02 OrthoFinder output from all 47 species
Dcu_g06794 VPS2.3 component *(VPS2/CHMP2) of ESCRT-III complex & original... 0.05 OrthoFinder output from all 47 species
GSVIVT01037973001 VPS2.2 Vesicle trafficking.endomembrane trafficking.ESCRT... 0.14 OrthoFinder output from all 47 species
LOC_Os03g43860.1 VPS2.2, LOC_Os03g43860 component VPS2/CHMP2 of ESCRT-III complex 0.02 OrthoFinder output from all 47 species
LOC_Os10g33660.1 VPS2.3, LOC_Os10g33660 component VPS2/CHMP2 of ESCRT-III complex 0.02 OrthoFinder output from all 47 species
Lfl_g38407 VPS2.3 component *(VPS2/CHMP2) of ESCRT-III complex & original... 0.12 OrthoFinder output from all 47 species
Lfl_g38742 VPS2.3 component *(VPS2/CHMP2) of ESCRT-III complex & original... 0.02 OrthoFinder output from all 47 species
Pp3c3_2240V3.1 VPS2.3, Pp3c3_2240 vacuolar protein sorting-associated protein 2.3 0.02 OrthoFinder output from all 47 species
Smo266789 VPS2.3 Vesicle trafficking.endomembrane trafficking.ESCRT... 0.06 OrthoFinder output from all 47 species
Solyc02g069680.3.1 VPS2.2, Solyc02g069680 component VPS2/CHMP2 of ESCRT-III complex 0.03 OrthoFinder output from all 47 species
Zm00001e012414_P003 VPS2.2, Zm00001e012414 component VPS2/CHMP2 of ESCRT-III complex 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0007034 vacuolar transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032182 ubiquitin-like protein binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043130 ubiquitin binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR005024 Snf7_fam 59 220
No external refs found!