Sam_g30170

Description : not classified & original description: none

Gene families : OG0004448 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004448_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g30170

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00046p00229090	evm_27.TU.AmTr_v1...	No description available	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021108.9	No alias	No description available	0.03	OrthoFinder output from all 47 species
Cre01.g012350	No alias	No description available	0.02	OrthoFinder output from all 47 species
Dac_g37686	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01038520001	No alias	No description available	0.03	OrthoFinder output from all 47 species
Gb_31883	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
LOC_Os02g04270.1	LOC_Os02g04270	no hits & (original description: none)	0.06	OrthoFinder output from all 47 species
Mp5g07000.1	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Nbi_g01477	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g43895	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g16411	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g22551	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e013596_P001	Zm00001e013596	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005730	nucleolus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
MF	GO:0008134	transcription factor binding	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
MF	GO:0046983	protein dimerization activity	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007015	DNA_pol_V/MYBBP1A	75	895

External Links

No external refs found!

Sam_g30170

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation