Sam_g29974


Description : not classified & original description: none


Gene families : OG0001977 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001977_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g29974

Target Alias Description ECC score Gene Family Method Actions
Adi_g103375 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g08028 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.35G070300.1 Ceric.35G070300 not classified & original description: pacid=50580926... 0.03 OrthoFinder output from all 47 species
Lfl_g13066 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g33272 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_88596g0010 No alias Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Msp_g14754 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g38225 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g16536 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc04g072830.4.1 Solyc04g072830 Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc04g072840.3.1 Solyc04g072840 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Zm00001e012950_P003 Zm00001e012950 Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000469 cleavage involved in rRNA processing IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP HCCA
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
MF GO:1990380 K48-linked deubiquitinase activity IEP HCCA
InterPro domains Description Start Stop
IPR041679 DNA2/NAM7-like_C 1028 1119
IPR041677 DNA2/NAM7_AAA_11 672 1021
No external refs found!