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  5. Sam_g29916

Sam_g29916


Description : plastidial thioredoxin *(TrxL2) & original description: none


Gene families : OG0003501 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003501_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g29916
Cluster HCCA: Cluster_173

Target Alias Description ECC score Gene Family Method Actions
Adi_g074476 WCRKC2 plastidial thioredoxin *(TrxL2) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene54858.t1 WCRKC2, Aspi01Gene54858 plastidial thioredoxin *(TrxL2) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g17068 WCRKC2 plastidial thioredoxin *(TrxL2) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
MF GO:0003972 RNA ligase (ATP) activity IEP HCCA
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0008452 RNA ligase activity IEP HCCA
BP GO:0015074 DNA integration IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR013766 Thioredoxin_domain 77 167
No external refs found!