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  5. Sam_g29907

Sam_g29907


Description : exoribonuclease *(RRP6L) & original description: none


Gene families : OG0002027 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002027_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g29907

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00111480 evm_27.TU.AmTr_v1... RNA processing.RNA decay.exosome complex.associated... 0.02 OrthoFinder output from all 47 species
AT2G32415 No alias Polynucleotidyl transferase, ribonuclease H fold protein... 0.02 OrthoFinder output from all 47 species
AT5G35910 No alias Polynucleotidyl transferase, ribonuclease H fold protein... 0.02 OrthoFinder output from all 47 species Mp3g22470.1
Ala_g12853 No alias exoribonuclease *(RRP6L) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g13373 No alias exoribonuclease *(RRP6L) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g36294 No alias exoribonuclease *(RRP6L) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g16804 No alias exoribonuclease *(RRP6L) & original description: none 0.02 OrthoFinder output from all 47 species
Gb_34925 No alias exoribonuclease (RRP6L) 0.02 OrthoFinder output from all 47 species
LOC_Os10g30100.1 LOC_Os10g30100 exoribonuclease (RRP6L) 0.03 OrthoFinder output from all 47 species
Lfl_g39504 No alias exoribonuclease *(RRP6L) & original description: none 0.02 OrthoFinder output from all 47 species
Mp3g07360.1 No alias exoribonuclease (RRP6L) 0.02 OrthoFinder output from all 47 species
Mp7g12880.1 No alias exoribonuclease (RRP6L) 0.02 OrthoFinder output from all 47 species
Ore_g35759 No alias exoribonuclease *(RRP6L) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g20342 No alias exoribonuclease *(RRP6L) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc10g018520.1.1 Solyc10g018520 exoribonuclease (RRP6L) 0.02 OrthoFinder output from all 47 species
Tin_g08818 No alias exoribonuclease *(RRP6L) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e004727_P001 Zm00001e004727 exoribonuclease (RRP6L) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
BP GO:0006139 nucleobase-containing compound metabolic process IEA Interproscan
MF GO:0008408 3'-5' exonuclease activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
MF GO:0070403 NAD+ binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR012588 Exosome-assoc_fac_Rrp6_N 37 117
IPR002121 HRDC_dom 458 525
IPR002562 3'-5'_exonuclease_dom 240 406
No external refs found!