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  5. Sam_g29902

Sam_g29902


Description : SSU processome assembly factor *(SOF1) & original description: none


Gene families : OG0004632 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004632_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g29902

Target Alias Description ECC score Gene Family Method Actions
Aob_g01818 No alias SSU processome assembly factor *(SOF1) & original... 0.02 OrthoFinder output from all 47 species
Ceric.02G115500.1 Ceric.02G115500 SSU processome assembly factor *(SOF1) & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000615.67 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.01 OrthoFinder output from all 47 species
Cre07.g318702 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
Ehy_g01244 No alias SSU processome assembly factor *(SOF1) & original... 0.03 OrthoFinder output from all 47 species
Sam_g22274 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP HCCA
BP GO:0006066 alcohol metabolic process IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
BP GO:0019751 polyol metabolic process IEP HCCA
BP GO:0043647 inositol phosphate metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044282 small molecule catabolic process IEP HCCA
BP GO:0046164 alcohol catabolic process IEP HCCA
BP GO:0046174 polyol catabolic process IEP HCCA
BP GO:0046434 organophosphate catabolic process IEP HCCA
BP GO:0046838 phosphorylated carbohydrate dephosphorylation IEP HCCA
BP GO:0046855 inositol phosphate dephosphorylation IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0071545 inositol phosphate catabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901616 organic hydroxy compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 325 360
IPR001680 WD40_repeat 284 316
IPR001680 WD40_repeat 60 95
IPR001680 WD40_repeat 102 136
IPR007287 Sof1 361 447
No external refs found!