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  5. Sam_g29894

Sam_g29894


Description : deubiquitinase *(AMSH) & original description: none


Gene families : OG0001591 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001591_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g29894
Cluster HCCA: Cluster_126

Target Alias Description ECC score Gene Family Method Actions
Als_g15610 AMSH1 deubiquitinase *(AMSH) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g25527 AMSH1 deubiquitinase *(AMSH) & original description: none 0.06 OrthoFinder output from all 47 species
Azfi_s0212.g058161 AMSH1 deubiquitinase *(AMSH) & original description: CDS=85-1446 0.02 OrthoFinder output from all 47 species
LOC_Os01g23640.1 AMSH1, LOC_Os01g23640 deubiquitinase (AMSH) 0.03 OrthoFinder output from all 47 species
Ppi_g18138 AMSH1 deubiquitinase *(AMSH) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007734 AMSH1 deubiquitinase *(AMSH) & original description: CDS=166-1617 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0139.g022666 AMSH1 deubiquitinase *(AMSH) & original description: CDS=122-1471 0.02 OrthoFinder output from all 47 species
Solyc01g060280.4.1 AMSH1, Solyc01g060280 deubiquitinase (AMSH) 0.03 OrthoFinder output from all 47 species
Solyc03g119330.3.1 AMSH1, Solyc03g119330 deubiquitinase (AMSH) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0008233 peptidase activity IEA Interproscan
MF GO:0008237 metallopeptidase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000270 peptidoglycan metabolic process IEP HCCA
MF GO:0004576 oligosaccharyl transferase activity IEP HCCA
BP GO:0006022 aminoglycan metabolic process IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0009254 peptidoglycan turnover IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
BP GO:0030203 glycosaminoglycan metabolic process IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
InterPro domains Description Start Stop
IPR000555 JAMM/MPN+_dom 313 419
IPR015063 USP8_dimer 9 98
No external refs found!