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  5. Sam_g29798

Sam_g29798


Description : RNA splicing factor *(PTB) & original description: none


Gene families : OG0001527 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001527_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g29798

Target Alias Description ECC score Gene Family Method Actions
Cba_g24087 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.07G100400.1 PTB2, ATPTB2,... RNA splicing factor *(PTB) & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g44883 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0045.g013166 PTB1, PTB, ATPTB1 not classified & original description: CDS=1-306 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030151 molybdenum ion binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 284 342
IPR000504 RRM_dom 57 107
No external refs found!