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  5. Sam_g29793

Sam_g29793


Description : not classified & original description: none


Gene families : OG0005612 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005612_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g29793

Target Alias Description ECC score Gene Family Method Actions
AT4G34910 No alias P-loop containing nucleoside triphosphate hydrolases... 0.02 OrthoFinder output from all 47 species
Ceric.24G071500.1 Ceric.24G071500 not classified & original description: pacid=50629253... 0.03 OrthoFinder output from all 47 species
MA_71366g0010 No alias DEAD-box ATP-dependent RNA helicase 16 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Pp3c27_1430V3.1 Pp3c27_1430 P-loop containing nucleoside triphosphate hydrolases... 0.02 OrthoFinder output from all 47 species
Solyc02g070100.3.1 Solyc02g070100 DEAD-box ATP-dependent RNA helicase 16 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Spa_g09337 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006364 rRNA processing IEP HCCA
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0047429 nucleoside triphosphate diphosphatase activity IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 39 214
IPR001650 Helicase_C 254 396
No external refs found!