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  5. Sam_g29767

Sam_g29767


Description : substrate adaptor *(SKIP4) of SCF E3 ubiquitin ligase complex & original description: none


Gene families : OG0000469 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000469_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g29767

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00211260 evm_27.TU.AmTr_v1... F-box/kelch-repeat protein At1g16250 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Aev_g03275 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g03987 SKIP4 substrate adaptor of SCF E3 ubiquitin ligase *(AFR) &... 0.02 OrthoFinder output from all 47 species
Ala_g11615 No alias substrate(PAL) adaptor of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Aop_g04885 No alias substrate(PAL) adaptor of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Cba_g10152 No alias substrate(PAL) adaptor of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Ceric.1Z076200.1 Ceric.1Z076200 substrate adaptor *(ARKP1) of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Gb_07972 No alias F-box/kelch-repeat protein At1g55270 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Len_g13438 No alias substrate(PAL) adaptor of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
MA_919958g0010 SKIP6 F-box/kelch-repeat protein SKIP6 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Msp_g12174 No alias substrate adaptor of SCF E3 ubiquitin ligase complex &... 0.03 OrthoFinder output from all 47 species
Ore_g00593 SKIP4 substrate adaptor *(SKIP4) of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Spa_g00406 No alias substrate adaptor of SCF E3 ubiquitin ligase complex &... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
InterPro domains Description Start Stop
IPR006652 Kelch_1 104 148
IPR006652 Kelch_1 156 191
IPR001810 F-box_dom 17 53
No external refs found!