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  5. Sam_g29683

Sam_g29683


Description : mRNA stability factor *(CRP1) & original description: none


Gene families : OG0007882 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007882_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g29683
Cluster HCCA: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
Dde_g10781 No alias mRNA stability factor *(CRP1) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01013362001 No alias Pentatricopeptide repeat-containing protein At5g42310,... 0.03 OrthoFinder output from all 47 species
Gb_11328 No alias plastidial mRNA processing factor (CRP1) 0.02 OrthoFinder output from all 47 species
MA_65267g0010 No alias plastidial mRNA processing factor (CRP1) 0.02 OrthoFinder output from all 47 species
Mp5g09810.1 No alias plastidial mRNA processing factor (CRP1) 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0053.g014172 No alias not classified & original description: CDS=1-2166 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 218 255
IPR002885 Pentatricopeptide_repeat 418 473
IPR002885 Pentatricopeptide_repeat 604 633
IPR002885 Pentatricopeptide_repeat 495 542
IPR002885 Pentatricopeptide_repeat 636 683
IPR002885 Pentatricopeptide_repeat 561 594
IPR033443 PPR_long 260 416
No external refs found!