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  5. Sam_g29618

Sam_g29618


Description : mechanosensitive cation channel *(MCA) & original description: none


Gene families : OG0002415 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002415_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g29618

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00152p00084120 MCA1,... Solute transport.channels.MCA mechanosensitive cation channel 0.03 OrthoFinder output from all 47 species
Aev_g13233 MCA1 mechanosensitive cation channel *(MCA) & original... 0.03 OrthoFinder output from all 47 species
Aev_g48122 MCA1 mechanosensitive cation channel *(MCA) & original... 0.03 OrthoFinder output from all 47 species
Ala_g01696 MCA1 mechanosensitive cation channel *(MCA) & original... 0.05 OrthoFinder output from all 47 species
Als_g14909 MCA1 mechanosensitive cation channel *(MCA) & original... 0.04 OrthoFinder output from all 47 species
Als_g14910 MCA2 mechanosensitive cation channel *(MCA) & original... 0.02 OrthoFinder output from all 47 species
Als_g16184 MCA1 mechanosensitive cation channel *(MCA) & original... 0.03 OrthoFinder output from all 47 species
Als_g51087 MCA1 mechanosensitive cation channel *(MCA) & original... 0.02 OrthoFinder output from all 47 species
Aop_g05446 MCA1 mechanosensitive cation channel *(MCA) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene43011.t1 MCA1, Aspi01Gene43011 mechanosensitive cation channel *(MCA) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene45801.t1 MCA2, Aspi01Gene45801 mechanosensitive cation channel *(MCA) & original... 0.02 OrthoFinder output from all 47 species
Cba_g13527 MCA1 mechanosensitive cation channel *(MCA) & original... 0.03 OrthoFinder output from all 47 species
Cba_g31700 MCA1 mechanosensitive cation channel *(MCA) & original... 0.03 OrthoFinder output from all 47 species
Ceric.03G065900.1 MCA1, Ceric.03G065900 mechanosensitive cation channel *(MCA) & original... 0.06 OrthoFinder output from all 47 species
Dac_g00733 MCA1 mechanosensitive cation channel *(MCA) & original... 0.04 OrthoFinder output from all 47 species
Dcu_g06243 MCA1 mechanosensitive cation channel *(MCA) & original... 0.04 OrthoFinder output from all 47 species
Dcu_g32743 MCA1 mechanosensitive cation channel *(MCA) & original... 0.05 OrthoFinder output from all 47 species
LOC_Os03g06120.3 MCA1, LOC_Os03g06120 mechanosensitive cation channel (MCA) 0.05 OrthoFinder output from all 47 species
Len_g16735 MCA1 mechanosensitive cation channel *(MCA) & original... 0.03 OrthoFinder output from all 47 species
Len_g58792 MCA1 mechanosensitive cation channel *(MCA) & original... 0.02 OrthoFinder output from all 47 species
Lfl_g37541 MCA1 mechanosensitive cation channel *(MCA) & original... 0.05 OrthoFinder output from all 47 species
MA_10433546g0010 MCA2 Protein MID1-COMPLEMENTING ACTIVITY 2 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_1425g0010 MCA1 Cell number regulator 13 OS=Zea mays... 0.03 OrthoFinder output from all 47 species
MA_6161g0010 MCA1 Cell number regulator 13 OS=Zea mays... 0.04 OrthoFinder output from all 47 species
Mp5g19510.1 MCA1 mechanosensitive cation channel (MCA) 0.03 OrthoFinder output from all 47 species
Nbi_g12337 MCA1 mechanosensitive cation channel *(MCA) & original... 0.02 OrthoFinder output from all 47 species
Ore_g07417 MCA1 mechanosensitive cation channel *(MCA) & original... 0.02 OrthoFinder output from all 47 species
Pnu_g24918 MCA1 mechanosensitive cation channel *(MCA) & original... 0.02 OrthoFinder output from all 47 species
Ppi_g00996 MCA1 mechanosensitive cation channel *(MCA) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g001243 MCA1 not classified & original description: CDS=164-2053 0.04 OrthoFinder output from all 47 species
Spa_g06407 MCA1 mechanosensitive cation channel *(MCA) & original... 0.04 OrthoFinder output from all 47 species
Zm00001e000437_P001 MCA1, Zm00001e000437 mechanosensitive cation channel (MCA) 0.02 OrthoFinder output from all 47 species
Zm00001e016239_P001 MCA1, Zm00001e016239 mechanosensitive cation channel (MCA) 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
InterPro domains Description Start Stop
IPR045766 MCAfunc 26 166
IPR006461 PLAC_motif_containing 307 404
No external refs found!