Sam_g29586


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g29586

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00056p00185560 VAC1, ECB2, ATECB2 RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
AT3G16610 No alias pentatricopeptide (PPR) repeat-containing protein 0.02 OrthoFinder output from all 47 species
Adi_g004488 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g023974 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g034749 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g058786 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g067822 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g101336 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g102361 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g07273 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g18046 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g05216 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g17473 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g24730 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g28360 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g03179 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g03840 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g03878 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g04452 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g05739 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g05916 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06074 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06363 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g06398 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07067 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07262 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07375 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07386 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g08105 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g14743 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g18476 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18506 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g18796 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g19114 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g21031 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g30790 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g30874 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g33154 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g47255 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g55234 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g63542 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g20073 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g28209 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09002 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g23679 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g28416 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g31078 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene02630.t1 CRK8, Aspi01Gene02630 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene37147.t1 Aspi01Gene37147 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g04699 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g06947 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g36071 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g45939 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.05G087100.1 Ceric.05G087100 not classified & original description: pacid=50579181... 0.02 OrthoFinder output from all 47 species
Ceric.17G049800.1 Ceric.17G049800 not classified & original description: pacid=50617439... 0.02 OrthoFinder output from all 47 species
Dcu_g06332 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g07698 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g08493 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g08608 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g08949 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08951 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g16964 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g28005 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g35846 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g36949 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g38580 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g47804 MEF21 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g50838 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g05887 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g15910 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22814 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g25105 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g26771 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g35440 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g06009 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g14557 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g20660 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g21131 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g23831 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01003124001 OTP86 Pentatricopeptide repeat-containing protein At3g63370,... 0.03 OrthoFinder output from all 47 species
GSVIVT01025569001 No alias Pentatricopeptide repeat-containing protein At5g66500,... 0.02 OrthoFinder output from all 47 species
GSVIVT01028022001 No alias Pentatricopeptide repeat-containing protein At3g62890... 0.02 OrthoFinder output from all 47 species
Gb_01327 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
Gb_14728 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.02 OrthoFinder output from all 47 species
LOC_Os01g42280.1 CRR21, LOC_Os01g42280 RNA editing factor (CRR21) 0.03 OrthoFinder output from all 47 species
Len_g03900 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g04264 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g15007 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g18252 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g33495 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g33772 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g47679 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_137736g0010 REME1 Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
MA_71104g0010 CRR22 Pentatricopeptide repeat-containing protein At3g12770... 0.02 OrthoFinder output from all 47 species
Msp_g03209 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g09439 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g15571 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g20830 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g24508 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g24509 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g24535 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g27086 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g28998 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g33836 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g40942 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g44345 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g45692 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g46064 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g48092 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g48539 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g20342 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g24808 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g27959 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g32352 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g12406 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g16519 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g32595 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g46650 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g04466 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g20310 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g22860 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g23075 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30997 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g13834 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g29483 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g31296 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59234 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g59297 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g59354 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0022.g008651 No alias not classified & original description: CDS=88-3096 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0125.g021689 No alias S-adenosyl methionine transporter *(GOSAMT) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0245.g026691 No alias not classified & original description: CDS=1-2898 0.03 OrthoFinder output from all 47 species
Sam_g09699 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g11177 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g26535 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g27190 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g33616 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g40435 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo105614 CRR2 Pentatricopeptide repeat-containing protein At3g02330,... 0.02 OrthoFinder output from all 47 species
Smo181046 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Solyc05g013200.1.1 OTP85, Solyc05g013200 RNA editing factor (OTP85) 0.02 OrthoFinder output from all 47 species
Spa_g15227 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g30543 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g06686 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g26878 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g27976 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e000621_P001 CRR22, Zm00001e000621 Pentatricopeptide repeat-containing protein At3g12770... 0.03 OrthoFinder output from all 47 species
Zm00001e023800_P003 PDE247, CLB19,... RNA editing factor (CLB19) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004668 protein-arginine deiminase activity IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006576 biogenic amine metabolic process IEP HCCA
BP GO:0006595 polyamine metabolic process IEP HCCA
BP GO:0006596 polyamine biosynthetic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
BP GO:0009309 amine biosynthetic process IEP HCCA
BP GO:0009445 putrescine metabolic process IEP HCCA
BP GO:0009446 putrescine biosynthetic process IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines IEP HCCA
BP GO:0042401 biogenic amine biosynthetic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 97 119
IPR002885 Pentatricopeptide_repeat 201 224
IPR002885 Pentatricopeptide_repeat 300 329
IPR002885 Pentatricopeptide_repeat 123 170
IPR002885 Pentatricopeptide_repeat 226 272
IPR002885 Pentatricopeptide_repeat 22 68
No external refs found!