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  5. Sam_g29561

Sam_g29561


Description : component *(MED26) of MEDIATOR transcription co-activator complex & original description: none


Gene families : OG0000390 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000390_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g29561

Target Alias Description ECC score Gene Family Method Actions
Adi_g021757 No alias component *(MED26) of MEDIATOR transcription... 0.04 OrthoFinder output from all 47 species
Adi_g021758 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g085833 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g125956 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g20783 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene48003.t1 Aspi01Gene48003 component *(MED26) of MEDIATOR transcription... 0.03 OrthoFinder output from all 47 species
Dcu_g19305 No alias component *(MED26) of MEDIATOR transcription... 0.04 OrthoFinder output from all 47 species
Ehy_g07754 No alias component *(MED26) of MEDIATOR transcription... 0.02 OrthoFinder output from all 47 species
LOC_Os05g34210.1 LOC_Os05g34210 component MED26 of MEDIATOR transcription co-activator complex 0.02 OrthoFinder output from all 47 species
Lfl_g04807 No alias component *(MED26) of MEDIATOR transcription... 0.03 OrthoFinder output from all 47 species
MA_83257g0010 No alias component MED26 of MEDIATOR transcription co-activator complex 0.04 OrthoFinder output from all 47 species
Ppi_g09070 No alias component *(MED26) of MEDIATOR transcription... 0.02 OrthoFinder output from all 47 species
Ppi_g17469 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011548 No alias not classified & original description: CDS=1-762 0.02 OrthoFinder output from all 47 species
Zm00001e027059_P003 Zm00001e027059 component MED26 of MEDIATOR transcription co-activator complex 0.02 OrthoFinder output from all 47 species
Zm00001e035696_P001 Zm00001e035696 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e039442_P001 Zm00001e039442 Probable mediator of RNA polymerase II transcription... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007030 Golgi organization IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR017923 TFIIS_N 147 193
No external refs found!