Sam_g29423

Description : not classified & original description: none

Gene families : OG0005577 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005577_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g29423

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00019p00240690	evm_27.TU.AmTr_v1...	Ribulose bisphosphate carboxylase/oxygenase activase,...	0.02	OrthoFinder output from all 47 species
Aev_g06596	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g06168	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Aob_g09667	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g14641	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g13522	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g14854	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g24022	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
GSVIVT01016062001	No alias	Ribulose bisphosphate carboxylase/oxygenase activase,...	0.04	OrthoFinder output from all 47 species
Gb_29248	No alias	Ribulose bisphosphate carboxylase/oxygenase activase,...	0.05	OrthoFinder output from all 47 species
LOC_Os04g56320.1	LOC_Os04g56320	Ribulose bisphosphate carboxylase/oxygenase activase 2,...	0.06	OrthoFinder output from all 47 species
Len_g50097	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
MA_10428784g0010	No alias	Ribulose bisphosphate carboxylase/oxygenase activase,...	0.02	OrthoFinder output from all 47 species
MA_379291g0010	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Mp2g04090.1	No alias	Ribulose bisphosphate carboxylase/oxygenase activase,...	0.03	OrthoFinder output from all 47 species
Msp_g02450	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Pir_g07975	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g58392	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Smo82367	No alias	Ribulose bisphosphate carboxylase/oxygenase activase,...	0.06	OrthoFinder output from all 47 species
Solyc11g027920.2.1	Solyc11g027920	Ribulose bisphosphate carboxylase/oxygenase activase,...	0.02	OrthoFinder output from all 47 species
Spa_g53767	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g21285	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004386	helicase activity	IEP	HCCA
BP	GO:0006720	isoprenoid metabolic process	IEP	HCCA
BP	GO:0006952	defense response	IEP	HCCA
BP	GO:0008299	isoprenoid biosynthetic process	IEP	HCCA
BP	GO:0008610	lipid biosynthetic process	IEP	HCCA
MF	GO:0015299	obsolete solute:proton antiporter activity	IEP	HCCA
BP	GO:0044255	cellular lipid metabolic process	IEP	HCCA
MF	GO:0046422	violaxanthin de-epoxidase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003959	ATPase_AAA_core	197	339

External Links

No external refs found!

Sam_g29423

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation