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  5. Sam_g29341

Sam_g29341


Description : not classified & original description: none


Gene families : OG0001052 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001052_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g29341
Cluster HCCA: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00122p00127250 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.02 OrthoFinder output from all 47 species
AT1G13300 HRS1 myb-like transcription factor family protein 0.03 OrthoFinder output from all 47 species
AT2G03500 No alias Homeodomain-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G25790 No alias myb-like transcription factor family protein 0.03 OrthoFinder output from all 47 species
Adi_g019107 No alias GARP subgroup HHO transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene47868.t1 Aspi01Gene47868 GARP subgroup HHO transcription factor & original... 0.04 OrthoFinder output from all 47 species
Cba_g22464 No alias GARP subgroup HHO transcription factor & original... 0.04 OrthoFinder output from all 47 species
Cba_g25602 No alias GARP subgroup HHO transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.21G045700.1 Ceric.21G045700 GARP subgroup HHO transcription factor & original... 0.04 OrthoFinder output from all 47 species
Dcu_g03915 No alias GARP subgroup HHO transcription factor & original... 0.06 OrthoFinder output from all 47 species
Dcu_g16223 No alias GARP subgroup HHO transcription factor & original... 0.03 OrthoFinder output from all 47 species
Dcu_g18561 No alias GARP subgroup HHO transcription factor & original... 0.02 OrthoFinder output from all 47 species
Gb_34639 No alias G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species
Lfl_g03168 No alias GARP subgroup HHO transcription factor & original... 0.07 OrthoFinder output from all 47 species
Lfl_g40586 No alias GARP subgroup HHO transcription factor & original... 0.02 OrthoFinder output from all 47 species
MA_541749g0010 No alias G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species
MA_58982g0010 ATCAD9, CAD9 Enzyme classification.EC_1 oxidoreductases.EC_1.1... 0.01 OrthoFinder output from all 47 species
Msp_g25323 No alias GARP subgroup HHO transcription factor & original... 0.05 OrthoFinder output from all 47 species
Nbi_g04274 No alias GARP subgroup HHO transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ore_g11389 No alias GARP subgroup HHO transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ore_g43039 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo402040 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 OrthoFinder output from all 47 species
Solyc12g006800.2.1 Solyc12g006800 G2-like GARP transcription factor 0.04 OrthoFinder output from all 47 species
Spa_g55258 No alias GARP subgroup HHO transcription factor & original... 0.03 OrthoFinder output from all 47 species
Tin_g11367 No alias GARP subgroup HHO transcription factor & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
MF GO:0005544 calcium-dependent phospholipid binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!