Sam_g29285


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g29285

Target Alias Description ECC score Gene Family Method Actions
Adi_g003294 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g005491 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g005743 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g014778 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g021050 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g055053 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g06254 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g07982 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g17889 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g20072 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g21708 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g22000 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g29330 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g32661 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g32981 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g42060 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g42368 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g18491 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g24034 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g25829 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g30878 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g35743 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g36223 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g36547 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g30779 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g55271 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g24428 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g26992 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27919 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g41127 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g03649 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g05682 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g16410 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g20132 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g30728 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g31135 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g42334 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene02798.t1 Aspi01Gene02798 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene20358.t1 Aspi01Gene20358 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene25867.t1 Aspi01Gene25867 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34514.t1 Aspi01Gene34514 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34799.t1 Aspi01Gene34799 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene41775.t1 Aspi01Gene41775 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene43949.t1 OTP84, Aspi01Gene43949 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene46912.t1 Aspi01Gene46912 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene64480.t1 Aspi01Gene64480 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene70575.t1 Aspi01Gene70575 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0035.g025575 CRR2 not classified & original description: CDS=1-1563 0.03 OrthoFinder output from all 47 species
Cba_g05314 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05567 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05882 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g06531 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g06593 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07194 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07291 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07325 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07719 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07750 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07786 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g11909 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g12574 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g14102 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20853 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g20864 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g26795 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g29697 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g29703 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g34546 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g45574 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g58787 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g66997 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67033 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67481 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67765 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g67898 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g76101 EMB2261 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g76849 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.06G062800.1 Ceric.06G062800 not classified & original description: pacid=50620833... 0.03 OrthoFinder output from all 47 species
Ceric.30G024700.1 Ceric.30G024700 not classified & original description: pacid=50608167... 0.02 OrthoFinder output from all 47 species
Dac_g22650 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g23468 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g35237 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g35846 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g37678 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g47882 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g51736 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g05757 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g28812 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g34076 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01036788001 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Len_g04350 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g13686 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18010 VAC1, ECB2, ATECB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18274 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g18520 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18585 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18985 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18986 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g21178 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g36343 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g40021 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g44142 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g44381 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g54484 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g15749 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g16956 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g23637 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g37653 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g39249 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g03860 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g04514 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g28205 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g29683 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g31349 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g44820 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g45692 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g48531 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g16060 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g01374 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g03262 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13524 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63612 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g63833 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g30620 OTP82 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g06373 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g06887 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g22095 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g29583 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g39360 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g47516 OTP85 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53207 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g57369 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g57817 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0027.g009720 No alias not classified & original description: CDS=1-2334 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0199.g025568 No alias not classified & original description: CDS=1-2793 0.03 OrthoFinder output from all 47 species
Sam_g05209 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g06558 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g07135 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g13631 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g16312 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g17279 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g21944 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g24755 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g25357 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g26236 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g26489 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g26535 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g26608 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g27930 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g32958 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g36326 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g37213 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g38015 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g39629 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g40244 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g46633 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g49237 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo105614 CRR2 Pentatricopeptide repeat-containing protein At3g02330,... 0.02 OrthoFinder output from all 47 species
Smo98472 CRR22 Pentatricopeptide repeat-containing protein At2g13600... 0.02 OrthoFinder output from all 47 species
Solyc01g081110.4.1 SLO1, Solyc01g081110 Pentatricopeptide repeat-containing protein At1g08070,... 0.03 OrthoFinder output from all 47 species
Solyc03g006990.1.1 Solyc03g006990 Pentatricopeptide repeat-containing protein At5g66520... 0.02 OrthoFinder output from all 47 species
Spa_g16206 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g05650 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g11463 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g17148 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g17584 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g27708 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g30433 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g34486 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g44215 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e001038_P001 CRR2, Zm00001e001038 Pentatricopeptide repeat-containing protein At1g08070,... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 327 374
IPR002885 Pentatricopeptide_repeat 226 272
IPR002885 Pentatricopeptide_repeat 123 170
IPR002885 Pentatricopeptide_repeat 21 68
IPR002885 Pentatricopeptide_repeat 531 578
IPR002885 Pentatricopeptide_repeat 432 461
IPR002885 Pentatricopeptide_repeat 506 528
IPR002885 Pentatricopeptide_repeat 607 633
IPR002885 Pentatricopeptide_repeat 98 120
IPR002885 Pentatricopeptide_repeat 200 222
IPR002885 Pentatricopeptide_repeat 406 426
No external refs found!