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  5. Sam_g29272

Sam_g29272


Description : subcluster CPL phosphatase & original description: none


Gene families : OG0002263 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002263_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g29272

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00267690 ATCPL1, CPL1,... Protein modification.dephosphorylation.aspartate-based... 0.02 OrthoFinder output from all 47 species
AMTR_s00029p00237180 CPL2, ATCPL2,... Protein modification.dephosphorylation.aspartate-based... 0.02 OrthoFinder output from all 47 species
AT4G21670 ATCPL1, CPL1, FRY2 C-terminal domain phosphatase-like 1 0.04 OrthoFinder output from all 47 species
AT5G01270 CPL2, ATCPL2 carboxyl-terminal domain (ctd) phosphatase-like 2 0.04 OrthoFinder output from all 47 species
Adi_g020486 ATCPL1, CPL1, FRY2 subcluster CPL phosphatase & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g058427 ATCPL1, CPL1, FRY2 group-I RNA polymerase-II phosphatase & original... 0.03 OrthoFinder output from all 47 species
Ala_g07037 ATCPL1, CPL1, FRY2 subcluster CPL phosphatase & original description: none 0.05 OrthoFinder output from all 47 species
Als_g14449 ATCPL1, CPL1, FRY2 subcluster CPL phosphatase & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g12939 ATCPL1, CPL1, FRY2 subcluster CPL phosphatase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene27053.t1 ATCPL1, CPL1,... group-I RNA polymerase-II phosphatase & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0003.g007650 ATCPL1, CPL1, FRY2 subcluster CPL phosphatase & original description: CDS=1-2355 0.05 OrthoFinder output from all 47 species
Azfi_s0115.g046235 ATCPL1, CPL1, FRY2 subcluster CPL phosphatase & original description: CDS=1135-3993 0.04 OrthoFinder output from all 47 species
Cba_g12689 ATCPL1, CPL1, FRY2 subcluster CPL phosphatase & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.03G049400.1 ATCPL1, CPL1,... subcluster CPL phosphatase & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.07G074800.1 ATCPL1, CPL1,... subcluster CPL phosphatase & original description:... 0.06 OrthoFinder output from all 47 species
Dcu_g07780 ATCPL1, CPL1, FRY2 subcluster CPL phosphatase & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g07116 ATCPL1, CPL1, FRY2 subcluster CPL phosphatase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01006447001 ATCPL1, CPL1, FRY2 RNA polymerase II C-terminal domain phosphatase-like 1... 0.02 OrthoFinder output from all 47 species
GSVIVT01006448001 ATCPL1, CPL1, FRY2 Protein modification.dephosphorylation.aspartate-based... 0.04 OrthoFinder output from all 47 species
Gb_14579 ATCPL1, CPL1, FRY2 RNA polymerase-II phosphatase. CPL phosphatase 0.03 OrthoFinder output from all 47 species
LOC_Os01g63820.1 CPL2, ATCPL2,... RNA polymerase-II phosphatase. CPL phosphatase 0.02 OrthoFinder output from all 47 species
LOC_Os02g42600.1 ATCPL1, CPL1,... RNA polymerase-II phosphatase. CPL phosphatase 0.03 OrthoFinder output from all 47 species
LOC_Os04g44710.1 ATCPL1, CPL1,... RNA polymerase-II phosphatase. CPL phosphatase 0.02 OrthoFinder output from all 47 species
Len_g12188 ATCPL1, CPL1, FRY2 subcluster CPL phosphatase & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g03481 ATCPL1, CPL1, FRY2 subcluster CPL phosphatase & original description: none 0.06 OrthoFinder output from all 47 species
MA_10033672g0010 ATCPL1, CPL1, FRY2 RNA polymerase-II phosphatase 0.01 OrthoFinder output from all 47 species
MA_10433196g0010 ATCPL1, CPL1, FRY2 RNA polymerase-II phosphatase 0.03 OrthoFinder output from all 47 species
MA_10433618g0010 ATCPL1, CPL1, FRY2 RNA polymerase-II phosphatase. CPL phosphatase 0.02 OrthoFinder output from all 47 species
MA_18750g0010 ATCPL1, CPL1, FRY2 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_18750g0020 ATCPL1, CPL1, FRY2 RNA polymerase-II phosphatase 0.02 OrthoFinder output from all 47 species
Mp4g06900.1 ATCPL1, CPL1, FRY2 RNA polymerase-II phosphatase. CPL phosphatase 0.02 OrthoFinder output from all 47 species
Msp_g07706 ATCPL1, CPL1, FRY2 subcluster CPL phosphatase & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g01492 ATCPL1, CPL1, FRY2 subcluster CPL phosphatase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g30260 ATCPL1, CPL1, FRY2 subcluster CPL phosphatase & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12247 ATCPL1, CPL1, FRY2 subcluster CPL phosphatase & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g01363 ATCPL1, CPL1, FRY2 subcluster CPL phosphatase & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000107 ATCPL1, CPL1, FRY2 subcluster CPL phosphatase & original description: CDS=314-3223 0.03 OrthoFinder output from all 47 species
Smo173599 ATCPL1, CPL1, FRY2 Protein modification.dephosphorylation.aspartate-based... 0.02 OrthoFinder output from all 47 species
Solyc02g078550.3.1 ATCPL1, CPL1,... RNA polymerase-II phosphatase. CPL phosphatase 0.02 OrthoFinder output from all 47 species
Spa_g54226 ATCPL1, CPL1, FRY2 subcluster CPL phosphatase & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e015225_P001 ATCPL1, CPL1,... RNA polymerase-II phosphatase. CPL phosphatase 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000469 cleavage involved in rRNA processing IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006474 N-terminal protein amino acid acetylation IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0017196 N-terminal peptidyl-methionine acetylation IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018206 peptidyl-methionine modification IEP HCCA
CC GO:0031248 protein acetyltransferase complex IEP HCCA
BP GO:0031365 N-terminal protein amino acid modification IEP HCCA
CC GO:0031414 N-terminal protein acetyltransferase complex IEP HCCA
CC GO:0031417 NatC complex IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP HCCA
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1902493 acetyltransferase complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR014720 dsRBD_dom 799 863
IPR014720 dsRBD_dom 662 718
IPR004274 FCP1_dom 257 375
No external refs found!