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  5. Sam_g29228

Sam_g29228


Description : not classified & original description: none


Gene families : OG0013233 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0013233_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g29228

Target Alias Description ECC score Gene Family Method Actions
Als_g18518 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g29338 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.24G022000.1 Ceric.24G022000 not classified & original description: pacid=50628904... 0.03 OrthoFinder output from all 47 species
Nbi_g24927 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 126 155
IPR002885 Pentatricopeptide_repeat 561 590
IPR002885 Pentatricopeptide_repeat 330 353
IPR002885 Pentatricopeptide_repeat 197 220
IPR002885 Pentatricopeptide_repeat 631 655
IPR002885 Pentatricopeptide_repeat 533 558
IPR002885 Pentatricopeptide_repeat 97 123
IPR002885 Pentatricopeptide_repeat 359 388
IPR002885 Pentatricopeptide_repeat 735 757
IPR002885 Pentatricopeptide_repeat 764 790
IPR002885 Pentatricopeptide_repeat 229 251
IPR002885 Pentatricopeptide_repeat 660 705
IPR002885 Pentatricopeptide_repeat 255 301
IPR002885 Pentatricopeptide_repeat 456 503
No external refs found!