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  5. Sam_g29005

Sam_g29005


Description : not classified & original description: none


Gene families : OG0001176 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001176_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g29005

Target Alias Description ECC score Gene Family Method Actions
Len_g01249 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g58032 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003745 No alias not classified & original description: CDS=1-705 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0015.g006639 No alias not classified & original description: CDS=1-333 0.03 OrthoFinder output from all 47 species
Sam_g00899 No alias not classified & original description: none 0.11 OrthoFinder output from all 47 species
Sam_g00935 No alias RGF precursor polypeptide & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g01060 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g01236 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g01283 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Sam_g01309 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g01687 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Sam_g02227 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g02303 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Sam_g02833 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Sam_g03222 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g03389 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Sam_g04740 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Sam_g04857 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g06213 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g06746 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Sam_g07200 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
Sam_g07401 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g10610 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g12780 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g14822 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g16378 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g17780 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g18801 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g21861 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g22554 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Sam_g24280 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g25698 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Sam_g26352 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Sam_g30182 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g31483 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g31885 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g33235 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Sam_g37055 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Sam_g37771 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g38153 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g38539 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Sam_g40133 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Sam_g42345 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g42553 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g43755 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Sam_g44226 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g44284 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Sam_g44593 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g48352 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Sam_g49184 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Sam_g49185 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Sam_g51709 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Sam_g52335 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
CC GO:0005956 protein kinase CK2 complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0015074 DNA integration IEP HCCA
MF GO:0019207 kinase regulator activity IEP HCCA
MF GO:0019887 protein kinase regulator activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1902554 serine/threonine protein kinase complex IEP HCCA
CC GO:1902911 protein kinase complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR005162 Retrotrans_gag_dom 98 177
No external refs found!