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  5. Sam_g28821

Sam_g28821


Description : protease *(Deg) & original description: none


Gene families : OG0000580 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000580_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g28821

Target Alias Description ECC score Gene Family Method Actions
AT5G40200 DegP9 DegP protease 9 0.02 OrthoFinder output from all 47 species
Aev_g13460 DegP10 protease *(Deg) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.23G054200.1 DegP9, Ceric.23G054200 protease *(Deg) & original description: pacid=50610093... 0.03 OrthoFinder output from all 47 species
Dcu_g19996 DegP10 protease *(Deg) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01007803001 DegP9 Protein degradation.peptidase families.serine-type... 0.02 OrthoFinder output from all 47 species
Gb_06473 DegP9 protease (Deg) 0.02 OrthoFinder output from all 47 species
LOC_Os02g50880.1 DegP9, LOC_Os02g50880 protease (Deg) 0.03 OrthoFinder output from all 47 species
LOC_Os05g34460.1 DegP10, LOC_Os05g34460 protease (Deg) 0.02 OrthoFinder output from all 47 species
Lfl_g17389 DegP9 protease *(Deg) & original description: none 0.02 OrthoFinder output from all 47 species
MA_17181g0010 DegP9 protease (Deg) 0.03 OrthoFinder output from all 47 species
MA_176437g0010 DegP10 protease (Deg) 0.03 OrthoFinder output from all 47 species
Mp1g05470.1 DegP9 protease (Deg) 0.03 OrthoFinder output from all 47 species
Mp5g11110.1 DegP10 protease (Deg) 0.02 OrthoFinder output from all 47 species
Msp_g06130 DegP9 protease *(Deg) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g11417 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g13579 DegP9 protease *(Deg) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc12g026400.2.1 DegP9, Solyc12g026400 protease (Deg) 0.04 OrthoFinder output from all 47 species
Spa_g15197 DegP9 protease *(Deg) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e031683_P001 DegP10, Zm00001e031683 protease (Deg) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004000 adenosine deaminase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019239 deaminase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR041517 DEGP_PDZ 659 804
IPR001478 PDZ 551 652
IPR017956 AT_hook_DNA-bd_motif 187 196
IPR017956 AT_hook_DNA-bd_motif 127 137
IPR017956 AT_hook_DNA-bd_motif 82 92
IPR017956 AT_hook_DNA-bd_motif 205 215
IPR017956 AT_hook_DNA-bd_motif 104 112
IPR017956 AT_hook_DNA-bd_motif 271 282
IPR017956 AT_hook_DNA-bd_motif 228 235
No external refs found!