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  5. Sam_g28774

Sam_g28774


Description : methylation reader *(MBD5-6) & original description: none


Gene families : OG0000559 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000559_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g28774

Target Alias Description ECC score Gene Family Method Actions
Adi_g008918 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g37130 No alias methylation reader *(MBD5-6) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.08G019600.1 ATMBD6, MBD6,... not classified & original description: pacid=50637929... 0.03 OrthoFinder output from all 47 species
GSVIVT01024954001 MBD05, MBD5, ATMBD5 Methyl-CpG-binding domain-containing protein 6... 0.02 OrthoFinder output from all 47 species
MA_77012g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0058.g014899 No alias methylation reader *(MBD5-6) & original description: CDS=290-1816 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
InterPro domains Description Start Stop
IPR001739 Methyl_CpG_DNA-bd 276 342
No external refs found!