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  5. Sam_g28631

Sam_g28631


Description : ASK-type linker component of SCF E3 ubiquitin ligase complexes & original description: none


Gene families : OG0005505 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005505_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g28631

Target Alias Description ECC score Gene Family Method Actions
Aob_g06627 SK21, ASK21 ASK-type linker component of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Aop_g20096 SK21, ASK21 ASK-type linker component of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Ceric.06G090100.1 SK21, ASK21,... ASK-type linker component of SCF E3 ubiquitin ligase... 0.05 OrthoFinder output from all 47 species
Dcu_g04680 SK21, ASK21 ASK-type linker component of SCF E3 ubiquitin ligase... 0.06 OrthoFinder output from all 47 species
Len_g51211 SK21, ASK21 ASK-type linker component of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Lfl_g09748 SK21, ASK21 ASK-type linker component of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
MA_72198g0010 SK21, ASK21 target protein binding component SKP1/ASK1 of... 0.02 OrthoFinder output from all 47 species
Pir_g18586 SK21, ASK21 ASK-type linker component of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g009058 SK20, ASK20 ASK-type linker component of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Solyc06g036070.3.1 SK21, ASK21,... target protein binding component SKP1/ASK1 of... 0.02 OrthoFinder output from all 47 species
Zm00001e021584_P008 SK21, ASK21,... target protein binding component SKP1/ASK1 of... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006906 vesicle fusion IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007030 Golgi organization IEP HCCA
BP GO:0016050 vesicle organization IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0048280 vesicle fusion with Golgi apparatus IEP HCCA
BP GO:0048284 organelle fusion IEP HCCA
BP GO:0061024 membrane organization IEP HCCA
BP GO:0061025 membrane fusion IEP HCCA
BP GO:0090174 organelle membrane fusion IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
InterPro domains Description Start Stop
IPR016072 Skp1_comp_dimer 210 247
No external refs found!