Sam_g28494


Description : not classified & original description: none


Gene families : OG0003766 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003766_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g28494

Target Alias Description ECC score Gene Family Method Actions
Aev_g09215 IQD5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g18472 IQD5 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g12586 IQD5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g13799 IQD6 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Mp7g08970.1 IQD6 Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
Pnu_g18253 IQD6 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g04521 IQD6 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005727 IQD3 not classified & original description: CDS=1-1620 0.03 OrthoFinder output from all 47 species
Tin_g12667 IQD6 not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
CC GO:0042575 DNA polymerase complex IEP HCCA
CC GO:0043625 delta DNA polymerase complex IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR025064 DUF4005 480 538
IPR000048 IQ_motif_EF-hand-BS 136 156
No external refs found!