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  5. Sam_g28389

Sam_g28389


Description : not classified & original description: none


Gene families : OG0000728 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000728_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g28389

Target Alias Description ECC score Gene Family Method Actions
Adi_g036246 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g055879 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g080396 HK5, AHK5, CKI2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0193.g057151 ATCRE1, WOL,... not classified & original description: CDS=363-3515 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001128.36 AHK1, HK1, ATHK1 Probable histidine kinase 5 OS=Oryza sativa subsp. japonica 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020710.84 ETR, ETR1, EIN1, AtETR1 Probable histidine kinase 4 OS=Oryza sativa subsp. japonica 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003497 ATCRE1, WOL,... not classified & original description: CDS=995-4153 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0077.g017574 AHK2, HK2 not classified & original description: CDS=1475-4381 0.04 OrthoFinder output from all 47 species
Smo109384 ETR, ETR1, EIN1, AtETR1 Ethylene receptor 2 OS=Pelargonium hortorum 0.03 OrthoFinder output from all 47 species
Smo112002 ATCRE1, WOL,... Probable histidine kinase 3 OS=Oryza sativa subsp. indica 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006066 alcohol metabolic process IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019751 polyol metabolic process IEP HCCA
BP GO:0043647 inositol phosphate metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044282 small molecule catabolic process IEP HCCA
BP GO:0046164 alcohol catabolic process IEP HCCA
BP GO:0046174 polyol catabolic process IEP HCCA
BP GO:0046434 organophosphate catabolic process IEP HCCA
BP GO:0046838 phosphorylated carbohydrate dephosphorylation IEP HCCA
BP GO:0046855 inositol phosphate dephosphorylation IEP HCCA
BP GO:0071545 inositol phosphate catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901616 organic hydroxy compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001789 Sig_transdc_resp-reg_receiver 378 494
IPR003594 HATPase_C 29 254
No external refs found!