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  5. Sam_g28352

Sam_g28352


Description : not classified & original description: none


Gene families : OG0001667 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001667_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g28352
Cluster HCCA: Cluster_181

Target Alias Description ECC score Gene Family Method Actions
Als_g22533 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g03291 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.36G006800.1 Ceric.36G006800 not classified & original description: pacid=50568928... 0.02 OrthoFinder output from all 47 species
LOC_Os04g56980.1 LOC_Os04g56980 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os08g39310.1 LOC_Os08g39310 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Lfl_g01092 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g21531 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g59206 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g02103 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0113.g020819 No alias not classified & original description: CDS=1-795 0.03 OrthoFinder output from all 47 species
Spa_g24170 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR003121 SWIB_MDM2_domain 169 240
IPR003121 SWIB_MDM2_domain 293 366
IPR014876 DEK_C 2 55
No external refs found!