Sam_g28243

Description : component *(eL6) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0001317 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001317_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g28243
Cluster	HCCA: Cluster_143

Target	Alias	Description	ECC score	Gene Family Method
AT1G18540	No alias	Ribosomal protein L6 family protein	0.05	OrthoFinder output from all 47 species
Adi_g030322	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aev_g02805	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Aop_g06856	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ceric.29G025100.1	Ceric.29G025100	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021127.127	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
Cre01.g011000	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	OrthoFinder output from all 47 species
Dcu_g11900	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
GSVIVT01033532001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
Gb_01604	No alias	component RPL6 of LSU proteome component	0.03	OrthoFinder output from all 47 species
LOC_Os02g37862.1	LOC_Os02g37862	component RPL6 of LSU proteome component	0.02	OrthoFinder output from all 47 species
LOC_Os04g39700.1	LOC_Os04g39700	component RPL6 of LSU proteome component	0.02	OrthoFinder output from all 47 species
Len_g33706	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Mp3g11670.1	No alias	component RPL6 of LSU proteome component	0.02	OrthoFinder output from all 47 species
Msp_g07934	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Pp3c14_4160V3.1	Pp3c14_4160	Ribosomal protein L6 family protein	0.03	OrthoFinder output from all 47 species
Sam_g06914	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g08583	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g08584	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g26138	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g31628	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Sam_g45675	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Smo270686	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
Solyc04g014720.4.1	Solyc04g014720	component RPL6 of LSU proteome component	0.06	OrthoFinder output from all 47 species
Solyc05g054070.4.1	Solyc05g054070	component RPL6 of LSU proteome component	0.02	OrthoFinder output from all 47 species
Solyc11g012110.2.1	Solyc11g012110	component RPL6 of LSU proteome component	0.02	OrthoFinder output from all 47 species
Spa_g44572	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Tin_g01561	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
MF	GO:0004129	cytochrome-c oxidase activity	IEP	HCCA
MF	GO:0005215	transporter activity	IEP	HCCA
CC	GO:0005751	mitochondrial respiratory chain complex IV	IEP	HCCA
BP	GO:0006091	generation of precursor metabolites and energy	IEP	HCCA
BP	GO:0006123	mitochondrial electron transport, cytochrome c to oxygen	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
MF	GO:0008097	5S rRNA binding	IEP	HCCA
MF	GO:0008324	monoatomic cation transmembrane transporter activity	IEP	HCCA
BP	GO:0009060	aerobic respiration	IEP	HCCA
MF	GO:0015075	monoatomic ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015078	proton transmembrane transporter activity	IEP	HCCA
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	HCCA
MF	GO:0015453	oxidoreduction-driven active transmembrane transporter activity	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
BP	GO:0015980	energy derivation by oxidation of organic compounds	IEP	HCCA
MF	GO:0016675	oxidoreductase activity, acting on a heme group of donors	IEP	HCCA
BP	GO:0019646	aerobic electron transport chain	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
MF	GO:0022853	active monoatomic ion transmembrane transporter activity	IEP	HCCA
MF	GO:0022857	transmembrane transporter activity	IEP	HCCA
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	HCCA
BP	GO:0022900	electron transport chain	IEP	HCCA
BP	GO:0022904	respiratory electron transport chain	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
CC	GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain	IEP	HCCA
CC	GO:0044391	ribosomal subunit	IEP	HCCA
CC	GO:0045277	respiratory chain complex IV	IEP	HCCA
BP	GO:0045333	cellular respiration	IEP	HCCA
CC	GO:0070069	cytochrome complex	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
CC	GO:0098803	respiratory chain complex	IEP	HCCA
BP	GO:1902600	proton transmembrane transport	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000915	60S_ribosomal_L6E	161	274

External Links

No external refs found!

Sam_g28243

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation