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  5. Sam_g28188

Sam_g28188


Description : not classified & original description: none


Gene families : OG0000592 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000592_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g28188

Target Alias Description ECC score Gene Family Method Actions
AT1G69710 No alias Regulator of chromosome condensation (RCC1) family with... 0.02 OrthoFinder output from all 47 species
Als_g16321 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.33G007900.1 Ceric.33G007900 not classified & original description: pacid=50607060... 0.02 OrthoFinder output from all 47 species
Dac_g12357 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g11326 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g06163 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g19874 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g09378 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g16726 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g26046 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e007456_P003 PRAF1, Zm00001e007456 PH, RCC1 and FYVE domains-containing protein 1... 0.02 OrthoFinder output from all 47 species
Zm00001e015467_P001 Zm00001e015467 PH, RCC1 and FYVE domains-containing protein 1... 0.03 OrthoFinder output from all 47 species
Zm00001e023246_P001 Zm00001e023246 PH, RCC1 and FYVE domains-containing protein 1... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
InterPro domains Description Start Stop
IPR027988 BRX_N 413 440
IPR000306 Znf_FYVE 176 235
IPR013591 Brevis_radix_dom 534 588
IPR000408 Reg_chr_condens 64 113
IPR000408 Reg_chr_condens 118 165
IPR000408 Reg_chr_condens 12 61
No external refs found!