Sam_g28003


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g28003

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00031p00067070 emb1899, EMB175, EMB166 Pentatricopeptide repeat-containing protein At5g03800... 0.02 OrthoFinder output from all 47 species
AMTR_s00038p00071780 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g26540... 0.03 OrthoFinder output from all 47 species
AMTR_s00049p00210350 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
AMTR_s00063p00172440 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
AMTR_s00077p00031710 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g27610... 0.02 OrthoFinder output from all 47 species
Adi_g004351 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g005399 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g008014 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g015421 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g021587 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g034926 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g036674 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g039747 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g055693 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g058156 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g058195 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g058262 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g061137 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g064984 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g066134 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g24643 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g07824 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g16829 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g17649 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g19430 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g31200 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g03858 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07134 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g12627 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g15433 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g16233 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18493 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g19058 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g25462 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26399 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g26584 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g30309 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g31288 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g40180 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g22677 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g22823 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27890 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g03193 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g12947 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g23985 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene28610.t1 REME1, Aspi01Gene28610 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0004.g008781 No alias not classified & original description: CDS=1-2346 0.03 OrthoFinder output from all 47 species
Azfi_s0006.g009910 EMB2758 not classified & original description: CDS=1-1803 0.03 OrthoFinder output from all 47 species
Azfi_s0012.g012909 No alias not classified & original description: CDS=1-2286 0.03 OrthoFinder output from all 47 species
Azfi_s0114.g046172 No alias not classified & original description: CDS=1-2679 0.03 OrthoFinder output from all 47 species
Azfi_s0164.g054282 No alias not classified & original description: CDS=1-4443 0.04 OrthoFinder output from all 47 species
Azfi_s0173.g055844 CRR22 not classified & original description: CDS=1-1863 0.03 OrthoFinder output from all 47 species
Azfi_s0221.g058730 No alias not classified & original description: CDS=1-747 0.02 OrthoFinder output from all 47 species
Azfi_s0269.g061123 No alias ssDNA-binding protein *(OSB) & original description: CDS=107-3214 0.03 OrthoFinder output from all 47 species
Azfi_s1396.g102567 No alias not classified & original description: CDS=1-1371 0.02 OrthoFinder output from all 47 species
Cba_g04038 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g04081 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g05960 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g06916 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g16610 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19915 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29963 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g34636 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g45942 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g56780 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g75327 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G121800.1 Ceric.01G121800 not classified & original description: pacid=50593016... 0.02 OrthoFinder output from all 47 species
Ceric.03G039400.1 Ceric.03G039400 not classified & original description: pacid=50571919... 0.02 OrthoFinder output from all 47 species
Ceric.04G034300.1 VAC1, ECB2,... not classified & original description: pacid=50630708... 0.02 OrthoFinder output from all 47 species
Ceric.04G112800.1 Ceric.04G112800 not classified & original description: pacid=50632583... 0.02 OrthoFinder output from all 47 species
Ceric.06G003600.1 Ceric.06G003600 not classified & original description: pacid=50620322... 0.02 OrthoFinder output from all 47 species
Ceric.06G009700.1 VAC1, ECB2,... not classified & original description: pacid=50619980... 0.02 OrthoFinder output from all 47 species
Ceric.10G022300.1 Ceric.10G022300 not classified & original description: pacid=50612428... 0.02 OrthoFinder output from all 47 species
Ceric.16G024400.1 Ceric.16G024400 not classified & original description: pacid=50589838... 0.03 OrthoFinder output from all 47 species
Ceric.22G009800.1 Ceric.22G009800 not classified & original description: pacid=50615356... 0.03 OrthoFinder output from all 47 species
Ceric.25G070000.1 VAC1, ECB2,... not classified & original description: pacid=50593626... 0.03 OrthoFinder output from all 47 species
Ceric.27G053200.1 Ceric.27G053200 not classified & original description: pacid=50604881... 0.03 OrthoFinder output from all 47 species
Ceric.29G060200.1 Ceric.29G060200 not classified & original description: pacid=50624987... 0.02 OrthoFinder output from all 47 species
Ceric.33G057300.1 Ceric.33G057300 not classified & original description: pacid=50607177... 0.02 OrthoFinder output from all 47 species
Ceric.34G063100.1 Ceric.34G063100 not classified & original description: pacid=50623551... 0.02 OrthoFinder output from all 47 species
Ceric.35G018800.1 Ceric.35G018800 not classified & original description: pacid=50580757... 0.02 OrthoFinder output from all 47 species
Ceric.36G028800.1 Ceric.36G028800 not classified & original description: pacid=50568963... 0.03 OrthoFinder output from all 47 species
Dac_g06901 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g07007 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g25290 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g27799 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g32259 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g44312 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07768 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08264 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08284 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08636 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08646 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08971 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g12070 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g21480 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g22538 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g26044 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g26235 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g26405 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g26710 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g35769 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g36116 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g38682 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g47670 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g50115 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g50838 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g02978 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g03994 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g07956 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g08437 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g22358 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g25743 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g26771 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g00984 OSB3 cofactor of plastid-encoded RNA polymerase *(TAC9) &... 0.04 OrthoFinder output from all 47 species
Ehy_g12053 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g14557 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g14560 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g19229 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g26697 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g26930 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g29669 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os03g32620.1 LOC_Os03g32620 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
LOC_Os04g14450.1 LOC_Os04g14450 Pentatricopeptide repeat-containing protein At4g14820... 0.02 OrthoFinder output from all 47 species
LOC_Os04g43430.2 LOC_Os04g43430 RNA editing factor (MEF12) 0.03 OrthoFinder output from all 47 species
LOC_Os05g24150.1 LOC_Os05g24150 Pentatricopeptide repeat-containing protein At2g34400... 0.02 OrthoFinder output from all 47 species
LOC_Os05g38190.2 LOC_Os05g38190 Pentatricopeptide repeat-containing protein At2g27610... 0.02 OrthoFinder output from all 47 species
LOC_Os06g41040.1 LOC_Os06g41040 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
LOC_Os08g28830.1 LOC_Os08g28830 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
LOC_Os08g37520.1 LOC_Os08g37520 Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
LOC_Os12g15460.1 LOC_Os12g15460 Pentatricopeptide repeat-containing protein At1g18485... 0.02 OrthoFinder output from all 47 species
Len_g03913 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g12295 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g17747 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g17972 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g34928 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g41161 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g44395 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g47776 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g55705 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g06601 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g11824 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_20585g0020 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
MA_41676g0020 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.03 OrthoFinder output from all 47 species
MA_656915g0010 CRR22 Pentatricopeptide repeat-containing protein DOT4,... 0.02 OrthoFinder output from all 47 species
Msp_g04332 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g14089 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g15576 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g34009 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g43136 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g44820 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g07619 CRR22 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g19044 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g20199 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g23619 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g02988 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g06871 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g17591 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g01995 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g02574 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g15819 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g20224 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g57724 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g57931 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g57989 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63292 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g63359 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g63649 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g63652 VAC1, ECB2, ATECB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g15455 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g02982 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06278 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g08795 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g13334 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g32992 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0009.g004399 No alias not classified & original description: CDS=167-2908 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007796 No alias not classified & original description: CDS=1-2022 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007869 No alias not classified & original description: CDS=1-2253 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0021.g008413 No alias not classified & original description: CDS=1-1578 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0051.g013907 No alias not classified & original description: CDS=1-1875 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0084.g018249 No alias ssDNA-binding protein *(OSB) & original description: CDS=114-2492 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0088.g018600 CRR22 not classified & original description: CDS=1-1767 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0095.g019295 No alias not classified & original description: CDS=1-1539 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0260.g026882 No alias not classified & original description: CDS=1-687 0.02 OrthoFinder output from all 47 species
Sam_g17721 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g19471 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g21461 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g24177 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g25324 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g26571 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g39629 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g45773 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g50176 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo101239 EMB2758 Pentatricopeptide repeat-containing protein At4g33990... 0.02 OrthoFinder output from all 47 species
Smo103099 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
Smo181046 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Smo41818 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 OrthoFinder output from all 47 species
Smo81625 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Solyc07g008480.3.1 Solyc07g008480 Pentatricopeptide repeat-containing protein At3g14730... 0.02 OrthoFinder output from all 47 species
Spa_g02212 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g02585 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g47167 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g04160 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08446 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g11538 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g11871 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g16987 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g23118 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g23272 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g26452 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g28558 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g31547 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g35636 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g35682 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 98 118
IPR002885 Pentatricopeptide_repeat 200 223
IPR002885 Pentatricopeptide_repeat 226 272
IPR002885 Pentatricopeptide_repeat 21 68
IPR002885 Pentatricopeptide_repeat 123 171
IPR002885 Pentatricopeptide_repeat 326 374
No external refs found!