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  5. Sam_g27966

Sam_g27966


Description : 5,10-methenyl-THF synthetase & original description: none


Gene families : OG0003580 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003580_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g27966
Cluster HCCA: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00235750 evm_27.TU.AmTr_v1... Coenzyme metabolism.tetrahydrofolate... 0.03 OrthoFinder output from all 47 species
Adi_g054516 No alias 5,10-methenyl-THF synthetase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene57962.t1 Aspi01Gene57962 5,10-methenyl-THF synthetase & original description: none 0.02 OrthoFinder output from all 47 species
Cre13.g587450 No alias Coenzyme metabolism.tetrahydrofolate... 0.01 OrthoFinder output from all 47 species
Dde_g05605 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g52013 No alias 5,10-methenyl-THF synthetase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g21086 No alias 5,10-methenyl-THF synthetase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01034559001 No alias Coenzyme metabolism.tetrahydrofolate... 0.01 OrthoFinder output from all 47 species
Lfl_g01289 No alias 5,10-methenyl-THF synthetase & original description: none 0.03 OrthoFinder output from all 47 species
Solyc04g071700.3.1 Solyc04g071700 5,10-methenyl-THF synthetase 0.02 OrthoFinder output from all 47 species
Zm00001e039459_P001 Zm00001e039459 5,10-methenyl-THF synthetase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0017025 TBP-class protein binding IEP HCCA
MF GO:0035673 oligopeptide transmembrane transporter activity IEP HCCA
MF GO:0042887 amide transmembrane transporter activity IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140296 general transcription initiation factor binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1904680 peptide transmembrane transporter activity IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR002698 FTHF_cligase 92 290
No external refs found!