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  5. Sam_g27905

Sam_g27905


Description : mitotic-specific Kleisin-type component *(SCC1) of cohesin regulator complex & original description: none


Gene families : OG0001004 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001004_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g27905

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00066p00174610 ATRAD21.3, SYN4,... Cell cycle.mitosis and meiosis.sister chromatid... 0.07 OrthoFinder output from all 47 species
AT5G16270 ATRAD21.3, SYN4 sister chromatid cohesion 1 protein 4 0.03 OrthoFinder output from all 47 species
Adi_g055911 ATRAD21.3, SYN4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g074735 ATRAD21.3, SYN4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g02522 ATRAD21.3, SYN4 mitotic-specific Kleisin-type component *(SCC1) of... 0.03 OrthoFinder output from all 47 species
Ala_g22608 ATRAD21.3, SYN4 mitotic-specific Kleisin-type component *(SCC1) of... 0.06 OrthoFinder output from all 47 species
Aop_g18160 ATRAD21.3, SYN4 mitotic-specific Kleisin-type component *(SCC1) of... 0.03 OrthoFinder output from all 47 species
Aop_g69638 ATRAD21.3, SYN4 mitotic-specific Kleisin-type component *(SCC1) of... 0.02 OrthoFinder output from all 47 species
Azfi_s0367.g066982 ATRAD21.3, SYN4 mitotic-specific Kleisin-type component *(SCC1) of... 0.03 OrthoFinder output from all 47 species
Cba_g03354 ATRAD21.3, SYN4 mitotic-specific Kleisin-type component *(SCC1) of... 0.02 OrthoFinder output from all 47 species
Cba_g13918 ATRAD21.3, SYN4 mitotic-specific Kleisin-type component *(SCC1) of... 0.04 OrthoFinder output from all 47 species
Ceric.31G015800.1 ATRAD21.3, SYN4,... mitotic-specific Kleisin-type component *(SCC1) of... 0.08 OrthoFinder output from all 47 species
Ceric.39G042400.1 ATRAD21.3, SYN4,... not classified & original description: pacid=50582800... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000615.44 SYN3, ATRAD21.2, ATSYN3 Cell cycle.mitosis and meiosis.sister chromatid... 0.01 OrthoFinder output from all 47 species
Dcu_g05845 ATRAD21.3, SYN4 mitotic-specific Kleisin-type component *(SCC1) of... 0.06 OrthoFinder output from all 47 species
Ehy_g07032 ATRAD21.3, SYN4 mitotic-specific Kleisin-type component *(SCC1) of... 0.03 OrthoFinder output from all 47 species
Ehy_g17726 ATRAD21.3, SYN4 mitotic-specific Kleisin-type component *(SCC1) of... 0.02 OrthoFinder output from all 47 species
Ehy_g29051 ATRAD21.3, SYN4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01004000001 ATRAD21.3, SYN4 Cell cycle.mitosis and meiosis.sister chromatid... 0.08 OrthoFinder output from all 47 species
Gb_15721 ATRAD21.3, SYN4 mitotic-specific Kleisin-type component SCC1 of cohesin... 0.04 OrthoFinder output from all 47 species
LOC_Os01g67250.1 ATRAD21.3, SYN4,... mitotic-specific Kleisin-type component SCC1 of cohesin... 0.09 OrthoFinder output from all 47 species
Len_g49535 ATRAD21.3, SYN4 mitotic-specific Kleisin-type component *(SCC1) of... 0.05 OrthoFinder output from all 47 species
Lfl_g06270 ATRAD21.3, SYN4 mitotic-specific Kleisin-type component *(SCC1) of... 0.04 OrthoFinder output from all 47 species
MA_10427350g0010 ATRAD21.3, SYN4 Sister chromatid cohesion 1 protein 4 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_168879g0020 SYN3, ATRAD21.2, ATSYN3 Sister chromatid cohesion 1 protein 3 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_673714g0010 ATRAD21.3, SYN4 Sister chromatid cohesion 1 protein 4 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Mp5g04800.1 ATRAD21.3, SYN4 mitotic-specific Kleisin-type component SCC1 of cohesin... 0.04 OrthoFinder output from all 47 species
Nbi_g06255 ATRAD21.3, SYN4 mitotic-specific Kleisin-type component *(SCC1) of... 0.03 OrthoFinder output from all 47 species
Ore_g19687 ATRAD21.3, SYN4 mitotic-specific Kleisin-type component *(SCC1) of... 0.06 OrthoFinder output from all 47 species
Pnu_g33062 ATRAD21.3, SYN4 mitotic-specific Kleisin-type component *(SCC1) of... 0.04 OrthoFinder output from all 47 species
Ppi_g62398 ATRAD21.3, SYN4 mitotic-specific Kleisin-type component *(SCC1) of... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0046.g013377 ATRAD21.3, SYN4 mitotic-specific Kleisin-type component *(SCC1) of... 0.07 OrthoFinder output from all 47 species
Solyc11g008740.2.1 ATRAD21.3, SYN4,... mitotic-specific Kleisin-type component SCC1 of cohesin... 0.09 OrthoFinder output from all 47 species
Spa_g52596 ATRAD21.3, SYN4 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e018959_P001 ATRAD21.3, SYN4,... mitotic-specific Kleisin-type component SCC1 of cohesin... 0.08 OrthoFinder output from all 47 species
Zm00001e028559_P002 ATRAD21.3, SYN4,... mitotic-specific Kleisin-type component SCC1 of cohesin... 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0042393 histone binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR006909 Rad21/Rec8_C_eu 1226 1273
IPR006910 Rad21_Rec8_N 1 100
No external refs found!