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  5. Sam_g27847

Sam_g27847


Description : BBX class-IV transcription factor & original description: none


Gene families : OG0000403 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000403_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g27847

Target Alias Description ECC score Gene Family Method Actions
AT2G21320 No alias B-box zinc finger family protein 0.03 OrthoFinder output from all 47 species
GSVIVT01010794001 STH RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
LOC_Os06g05890.1 LZF1, STH3,... transcription factor (BBX-DBB) 0.02 OrthoFinder output from all 47 species
LOC_Os09g35880.1 LOC_Os09g35880 transcription factor (BBX-DBB) 0.03 OrthoFinder output from all 47 species
Lfl_g06640 No alias BBX class-IV transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g14313 STO BBX class-IV transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0138.g022562 LZF1, STH3, DBB3 BBX class-IV transcription factor & original... 0.03 OrthoFinder output from all 47 species
Solyc01g110370.4.1 Solyc01g110370 transcription factor (BBX-DBB) 0.04 OrthoFinder output from all 47 species
Solyc06g073180.3.1 STO, Solyc06g073180 transcription factor (BBX-DBB) 0.03 OrthoFinder output from all 47 species
Zm00001e034791_P001 Zm00001e034791 transcription factor (BBX-DBB) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000315 Znf_B-box 138 176
IPR000315 Znf_B-box 87 126
No external refs found!