1. Home
  2. Species
  3. Salvinia molesta
  4. Sequence
  5. Sam_g27800

Sam_g27800


Description : Ran-activating protein of nucleocytoplasmic transport & original description: none


Gene families : OG0003182 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003182_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g27800

Target Alias Description ECC score Gene Family Method Actions
AT3G63130 RANGAP1, ATRANGAP1 RAN GTPase activating protein 1 0.03 OrthoFinder output from all 47 species
Adi_g129029 RANGAP2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g04540 RANGAP2 Ran-activating protein of nucleocytoplasmic transport &... 0.04 OrthoFinder output from all 47 species
Azfi_s0001.g000602 RANGAP2 Ran-activating protein of nucleocytoplasmic transport &... 0.03 OrthoFinder output from all 47 species
Ceric.36G048000.1 RANGAP2, Ceric.36G048000 Ran-activating protein of nucleocytoplasmic transport &... 0.02 OrthoFinder output from all 47 species
Dcu_g06325 RANGAP2 Ran-activating protein of nucleocytoplasmic transport &... 0.02 OrthoFinder output from all 47 species
Len_g02857 RANGAP2 Ran-activating protein of nucleocytoplasmic transport &... 0.03 OrthoFinder output from all 47 species
Lfl_g14972 RANGAP2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_83167g0010 RANGAP2 GTPase activating component Ran-GAP of nucleocytoplasmic... 0.02 OrthoFinder output from all 47 species
Solyc01g079680.3.1 RANGAP2, Solyc01g079680 GTPase activating component Ran-GAP of nucleocytoplasmic... 0.03 OrthoFinder output from all 47 species
Solyc09g065190.3.1 RANGAP2, Solyc09g065190 GTPase activating component Ran-GAP of nucleocytoplasmic... 0.02 OrthoFinder output from all 47 species
Zm00001e015119_P001 RANGAP2, Zm00001e015119 GTPase activating component Ran-GAP of nucleocytoplasmic... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001611 Leu-rich_rpt 248 268
IPR001611 Leu-rich_rpt 331 353
IPR001611 Leu-rich_rpt 135 156
IPR001611 Leu-rich_rpt 274 291
No external refs found!