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  5. Sam_g27778

Sam_g27778


Description : calcium-permeable channel *(OSCA) & original description: none


Gene families : OG0000264 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000264_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g27778

Target Alias Description ECC score Gene Family Method Actions
AT1G69450 No alias Early-responsive to dehydration stress protein (ERD4) 0.02 OrthoFinder output from all 47 species
Azfi_s0795.g087273 ERD4 not classified & original description: CDS=84-998 0.03 OrthoFinder output from all 47 species
Ceric.34G013900.1 ERD4, Ceric.34G013900 calcium-permeable channel *(OSCA) & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000388.27 No alias No description available 0.01 OrthoFinder output from all 47 species
Dcu_g07879 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g17232 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g40944 No alias calcium-permeable channel *(OSCA) & original description: none 0.02 OrthoFinder output from all 47 species
MA_10430247g0010 RXW8 calcium-permeable channel (OSCA) 0.02 OrthoFinder output from all 47 species
Mp8g07950.1 ERD4 calcium-permeable channel (OSCA) 0.03 OrthoFinder output from all 47 species
Ore_g20112 ERD4 calcium-permeable channel *(OSCA) & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c8_3900V3.1 Pp3c8_3900 ERD (early-responsive to dehydration stress) family protein 0.02 OrthoFinder output from all 47 species
Ppi_g13626 No alias calcium-permeable channel *(OSCA) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR003864 CSC1/OSCA1-like_7TM 350 621
IPR027815 CSC1/OSCA1-like_cyt 180 339
IPR032880 Csc1/OSCA1-like_N 5 158
No external refs found!