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  5. Sam_g27616

Sam_g27616


Description : DNA helicase *(MOM1) & original description: none


Gene families : OG0004810 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004810_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g27616

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00148p00090060 MOM1, MOM,... Helicase protein MOM1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT1G08060 MOM1, MOM ATP-dependent helicase family protein 0.06 OrthoFinder output from all 47 species
Adi_g086251 PKL, GYM, CHR6,... DNA helicase *(MOM1) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g02731 CHR5 DNA helicase *(MOM1) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g33419 PKR1, CHR4 DNA helicase *(MOM1) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene51090.t1 PKR1, CHR4,... DNA helicase *(MOM1) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06387 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g59347 PKR1, CHR4 DNA helicase *(MOM1) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.07G083100.1 PKL, GYM, CHR6,... DNA helicase *(MOM1) & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g20551 PKR1, CHR4 DNA helicase *(MOM1) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g15932 PKR1, CHR4 DNA helicase *(MOM1) & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g10011 PKR1, CHR4 DNA helicase *(MOM1) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g15408 PKL, GYM, CHR6,... DNA helicase *(MOM1) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g23969 PKL, GYM, CHR6,... DNA helicase *(MOM1) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g25172 PKL, GYM, CHR6,... DNA helicase *(MOM1) & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01025216001 MOM1, MOM Helicase protein MOM1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_01673 PKR1, CHR4 Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os02g02050.1 MOM1, MOM, LOC_Os02g02050 Helicase protein MOM1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os06g01320.1 MOM1, MOM, LOC_Os06g01320 Helicase protein MOM1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Len_g57128 MOM1, MOM DNA helicase *(MOM1) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07857 PKR1, CHR4 DNA helicase *(MOM1) & original description: none 0.08 OrthoFinder output from all 47 species
MA_9572741g0010 ATMBD9, MBD9 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Msp_g13654 PKR1, CHR4 DNA helicase *(MOM1) & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g25097 PKR1, CHR4 DNA helicase *(MOM1) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g62119 PKR1, CHR4 DNA helicase *(MOM1) & original description: none 0.03 OrthoFinder output from all 47 species
Smo440558 PKL, GYM, CHR6,... Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
Solyc06g010240.3.1 MOM1, MOM, Solyc06g010240 Helicase protein MOM1 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Spa_g07008 PKR1, CHR4 DNA helicase *(MOM1) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e036737_P001 MOM1, MOM, Zm00001e036737 Helicase protein MOM1 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0140658 ATP-dependent chromatin remodeler activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 486 530
IPR000330 SNF2_N 783 1014
IPR001650 Helicase_C 1040 1153
No external refs found!