1. Home
  2. Species
  3. Salvinia molesta
  4. Sequence
  5. Sam_g27579

Sam_g27579


Description : actin cytoskeleton connecting factor *(SINE) & original description: none


Gene families : OG0001812 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001812_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g27579
Cluster HCCA: Cluster_168

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00079090 evm_27.TU.AmTr_v1... Protein SINE1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT1G54385 No alias ARM repeat superfamily protein 0.04 OrthoFinder output from all 47 species
Als_g08768 No alias actin cytoskeleton connecting factor *(SINE) & original... 0.06 OrthoFinder output from all 47 species
Aop_g12633 No alias actin cytoskeleton connecting factor *(SINE) & original... 0.05 OrthoFinder output from all 47 species
Aspi01Gene25704.t1 Aspi01Gene25704 actin cytoskeleton connecting factor *(SINE) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene52489.t1 Aspi01Gene52489 actin cytoskeleton connecting factor *(SINE) & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0221.g058751 No alias actin cytoskeleton connecting factor *(SINE) & original... 0.02 OrthoFinder output from all 47 species
Ceric.38G061800.1 Ceric.38G061800 actin cytoskeleton connecting factor *(SINE) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01033391001 No alias Protein SINE1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_08088 No alias actin cytoskeleton connecting factor (SINE) 0.03 OrthoFinder output from all 47 species
Gb_10260 No alias actin cytoskeleton connecting factor (SINE) 0.03 OrthoFinder output from all 47 species
Nbi_g05394 No alias actin cytoskeleton connecting factor *(SINE) & original... 0.04 OrthoFinder output from all 47 species
Ppi_g10424 No alias actin cytoskeleton connecting factor *(SINE) & original... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0046.g013335 No alias actin cytoskeleton connecting factor *(SINE) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0176.g024613 No alias actin cytoskeleton connecting factor *(SINE) & original... 0.05 OrthoFinder output from all 47 species
Tin_g09004 No alias acTin cytoskeleton connecTing factor *(SINE) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e024451_P001 Zm00001e024451 actin cytoskeleton connecting factor (SINE) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!