Sam_g27537


Description : RNA pseudouridine synthase *(PUS2) & original description: none


Gene families : OG0004565 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004565_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g27537
Cluster HCCA: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
Adi_g074453 No alias RNA pseudouridine synthase *(PUS2) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g19695 No alias RNA pseudouridine synthase *(PUS2) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g13932 No alias RNA pseudouridine synthase *(PUS2) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g13003 No alias RNA pseudouridine synthase *(PUS2) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e030166_P001 Zm00001e030166 dual-specificity tRNA/rRNA pseudouridine synthase (RluA) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0009451 RNA modification IEA Interproscan
MF GO:0009982 pseudouridine synthase activity IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0017025 TBP-class protein binding IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
MF GO:0140296 general transcription initiation factor binding IEP HCCA
InterPro domains Description Start Stop
IPR006145 PsdUridine_synth_RsuA/RluA 138 340
No external refs found!