Description : RNA pseudouridine synthase *(PUS2) & original description: none
Gene families : OG0004565 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004565_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Sam_g27537 | |
Cluster | HCCA: Cluster_55 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Adi_g074453 | No alias | RNA pseudouridine synthase *(PUS2) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ala_g19695 | No alias | RNA pseudouridine synthase *(PUS2) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Ehy_g13932 | No alias | RNA pseudouridine synthase *(PUS2) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Len_g13003 | No alias | RNA pseudouridine synthase *(PUS2) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e030166_P001 | Zm00001e030166 | dual-specificity tRNA/rRNA pseudouridine synthase (RluA) | 0.02 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0001522 | pseudouridine synthesis | IEA | Interproscan |
MF | GO:0003723 | RNA binding | IEA | Interproscan |
BP | GO:0009451 | RNA modification | IEA | Interproscan |
MF | GO:0009982 | pseudouridine synthase activity | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004721 | phosphoprotein phosphatase activity | IEP | HCCA |
MF | GO:0008134 | transcription factor binding | IEP | HCCA |
MF | GO:0008138 | protein tyrosine/serine/threonine phosphatase activity | IEP | HCCA |
MF | GO:0016209 | antioxidant activity | IEP | HCCA |
BP | GO:0016311 | dephosphorylation | IEP | HCCA |
MF | GO:0016791 | phosphatase activity | IEP | HCCA |
MF | GO:0017025 | TBP-class protein binding | IEP | HCCA |
MF | GO:0042578 | phosphoric ester hydrolase activity | IEP | HCCA |
MF | GO:0140296 | general transcription initiation factor binding | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR006145 | PsdUridine_synth_RsuA/RluA | 138 | 340 |
No external refs found! |