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  5. Sam_g27532

Sam_g27532


Description : helicase auxiliary factor *(CDT1) & original description: none


Gene families : OG0007109 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007109_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g27532
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00171p00068790 CDT1, ATCDT1A,... Cell cycle.interphase.DNA replication.preinitiation.CDT1... 0.09 OrthoFinder output from all 47 species
AT2G31270 CDT1, ATCDT1A, CDT1A homolog of yeast CDT1 A 0.04 OrthoFinder output from all 47 species
AT3G54710 CDT1B, CDT1, ATCDT1B homolog of yeast CDT1 B homolog of yeast CDT1 B 0.02 OrthoFinder output from all 47 species
Als_g15053 CDT1, ATCDT1A, CDT1A helicase auxiliary factor *(CDT1) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g51250 CDT1B, CDT1, ATCDT1B helicase auxiliary factor *(CDT1) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g05243 CDT1, ATCDT1A, CDT1A helicase auxiliary factor *(CDT1) & original description: none 0.12 OrthoFinder output from all 47 species
Aspi01Gene29504.t1 CDT1, ATCDT1A,... helicase auxiliary factor *(CDT1) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene66565.t1 CDT1, ATCDT1A,... helicase auxiliary factor *(CDT1) & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.1Z001200.1 CDT1, ATCDT1A,... helicase auxiliary factor *(CDT1) & original... 0.04 OrthoFinder output from all 47 species
Cre03.g163300 No alias Cell cycle.interphase.DNA replication.preinitiation.CDT1... 0.03 OrthoFinder output from all 47 species
GSVIVT01024251001 CDT1, ATCDT1A, CDT1A Cell cycle.interphase.DNA replication.preinitiation.CDT1... 0.08 OrthoFinder output from all 47 species
GSVIVT01028303001 CDT1, ATCDT1A, CDT1A Cell cycle.interphase.DNA replication.preinitiation.CDT1... 0.05 OrthoFinder output from all 47 species
Gb_04601 CDT1, ATCDT1A, CDT1A helicase auxiliary factor (CDT1) 0.03 OrthoFinder output from all 47 species
LOC_Os04g10650.1 CDT1, ATCDT1A,... helicase auxiliary factor (CDT1) 0.1 OrthoFinder output from all 47 species
LOC_Os10g34820.2 CDT1, ATCDT1A,... helicase auxiliary factor (CDT1) 0.11 OrthoFinder output from all 47 species
Lfl_g29230 CDT1, ATCDT1A, CDT1A helicase auxiliary factor *(CDT1) & original description: none 0.03 OrthoFinder output from all 47 species
MA_114779g0010 CDT1B, CDT1, ATCDT1B helicase auxiliary factor (CDT1) 0.06 OrthoFinder output from all 47 species
MA_9011g0010 CDT1, ATCDT1A, CDT1A helicase auxiliary factor (CDT1) 0.07 OrthoFinder output from all 47 species
Mp5g09070.1 CDT1, ATCDT1A, CDT1A helicase auxiliary factor (CDT1) 0.03 OrthoFinder output from all 47 species
Msp_g13606 CDT1, ATCDT1A, CDT1A helicase auxiliary factor *(CDT1) & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g25997 CDT1, ATCDT1A, CDT1A helicase auxiliary factor *(CDT1) & original description: none 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000487 CDT1, ATCDT1A, CDT1A helicase auxiliary factor *(CDT1) & original... 0.05 OrthoFinder output from all 47 species
Smo403930 CDT1, ATCDT1A, CDT1A Cell cycle.interphase.DNA replication.preinitiation.CDT1... 0.04 OrthoFinder output from all 47 species
Solyc03g019960.3.1 CDT1, ATCDT1A,... helicase auxiliary factor (CDT1) 0.09 OrthoFinder output from all 47 species
Solyc06g008510.3.1 CDT1, ATCDT1A,... helicase auxiliary factor (CDT1) 0.07 OrthoFinder output from all 47 species
Zm00001e004505_P001 CDT1, ATCDT1A,... helicase auxiliary factor (CDT1) 0.03 OrthoFinder output from all 47 species
Zm00001e006735_P001 CDT1, ATCDT1A,... helicase auxiliary factor (CDT1) 0.02 OrthoFinder output from all 47 species
Zm00001e036500_P001 CDT1, ATCDT1A,... helicase auxiliary factor (CDT1) 0.04 OrthoFinder output from all 47 species
Zm00001e041798_P001 CDT1, ATCDT1A,... helicase auxiliary factor (CDT1) 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003896 DNA primase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006269 DNA replication, synthesis of RNA primer IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0032392 DNA geometric change IEP HCCA
BP GO:0032508 DNA duplex unwinding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR014939 CDT1_Gemini-bd-like 75 195
IPR032054 Cdt1_C 603 693
No external refs found!