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  5. Sam_g27527

Sam_g27527


Description : deubiquitinase *(UBP12-13) & original description: none


Gene families : OG0001048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001048_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g27527

Target Alias Description ECC score Gene Family Method Actions
AMTR_s03028p00008020 UBP12,... Protein degradation.peptidase families.cysteine-type... 0.03 OrthoFinder output from all 47 species
AT5G06600 UBP12 ubiquitin-specific protease 12 0.05 OrthoFinder output from all 47 species
Adi_g058359 UBP13 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g114837 UBP13 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021350.30 UBP12 Protein degradation.peptidase families.cysteine-type... 0.02 OrthoFinder output from all 47 species
Dcu_g06495 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g16398 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01022498001 UBP12 Protein degradation.peptidase families.cysteine-type... 0.02 OrthoFinder output from all 47 species
Lfl_g40373 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g001264 UBP13 deubiquitinase *(UBP12-13) & original description: CDS=100-3450 0.02 OrthoFinder output from all 47 species
Solyc11g006320.2.1 UBP12, Solyc11g006320 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.02 OrthoFinder output from all 47 species
Spa_g14809 UBP12 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e017788_P001 UBP12, Zm00001e017788 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004843 cysteine-type deubiquitinase activity IEA Interproscan
BP GO:0016579 protein deubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR024729 USP7_ICP0-binding_dom 347 600
IPR029346 USP_C 615 824
IPR001394 Peptidase_C19_UCH 1 243
No external refs found!