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  5. Sam_g27409

Sam_g27409


Description : polynucleotide kinase involved in ITS2 rRNA removal *(GRC3) & original description: none


Gene families : OG0006547 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006547_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g27409

Target Alias Description ECC score Gene Family Method Actions
AT5G11010 No alias Pre-mRNA cleavage complex II protein family 0.03 OrthoFinder output from all 47 species
Als_g22121 No alias polynucleotide kinase involved in ITS2 rRNA removal... 0.04 OrthoFinder output from all 47 species
Aob_g20732 No alias polynucleotide kinase involved in ITS2 rRNA removal... 0.03 OrthoFinder output from all 47 species
Aop_g11094 No alias polynucleotide kinase involved in ITS2 rRNA removal... 0.03 OrthoFinder output from all 47 species
Dcu_g01616 No alias polynucleotide kinase involved in ITS2 rRNA removal... 0.02 OrthoFinder output from all 47 species
Ehy_g03858 No alias polynucleotide kinase involved in ITS2 rRNA removal... 0.04 OrthoFinder output from all 47 species
Mp1g28270.1 No alias GRC3 polynucleotide kinase involved in ITS2 rRNA removal 0.03 OrthoFinder output from all 47 species
Nbi_g25085 No alias polynucleotide kinase involved in ITS2 rRNA removal... 0.04 OrthoFinder output from all 47 species
Zm00001e016654_P001 Zm00001e016654 GRC3 polynucleotide kinase involved in ITS2 rRNA removal 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR032319 CLP1_P 77 233
No external refs found!