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  5. Sam_g27266

Sam_g27266


Description : KNOX-type transcription factor & original description: none


Gene families : OG0000252 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000252_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g27266
Cluster HCCA: Cluster_168

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00085p00165180 KNAT6, KNAT6L,... RNA biosynthesis.transcriptional activation.HB... 0.05 OrthoFinder output from all 47 species
Adi_g019966 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g21136 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g22220 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0001.g000431 KNAT7, IXR11 KNOX-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Azfi_s0022.g016023 KNAT6, KNAT6L, KNAT6S not classified & original description: CDS=247-1020 0.03 OrthoFinder output from all 47 species
Azfi_s0574.g078063 KNAT3 KNOX-type transcription factor & original description:... 0.05 OrthoFinder output from all 47 species
Dcu_g28016 KNAT3 KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g48747 KNAT3 KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01013790001 KNAT6, KNAT6L, KNAT6S RNA biosynthesis.transcriptional activation.HB... 0.02 OrthoFinder output from all 47 species
LOC_Os03g47022.1 BP, BP1, KNAT1,... transcription factor (KNOX) 0.02 OrthoFinder output from all 47 species
LOC_Os03g51690.2 BP, BP1, KNAT1,... transcription factor (KNOX) 0.04 OrthoFinder output from all 47 species
Ore_g25139 KNAT3 KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g25528 BP, BP1, KNAT1 KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g02102 KNAT3 KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005308 BUM1, SHL, STM,... KNOX-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007633 KNAT7, IXR11 not classified & original description: CDS=1-1266 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0115.g020964 BUM1, SHL, STM,... KNOX-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0142.g022803 No alias not classified & original description: CDS=20-451 0.03 OrthoFinder output from all 47 species
Solyc02g081120.4.1 BUM1, SHL, STM,... transcription factor (KNOX) 0.03 OrthoFinder output from all 47 species
Spa_g22911 KNAT3 KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e011538_P001 BP, BP1, KNAT1,... transcription factor (KNOX) 0.02 OrthoFinder output from all 47 species
Zm00001e017489_P001 KNAT6, KNAT6L,... transcription factor (KNOX) 0.02 OrthoFinder output from all 47 species
Zm00001e027562_P001 KNAT6, KNAT6L,... transcription factor (KNOX) 0.02 OrthoFinder output from all 47 species
Zm00001e029453_P001 KNAT6, KNAT6L,... transcription factor (KNOX) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR008422 Homeobox_KN_domain 357 396
IPR005540 KNOX1 62 101
No external refs found!