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  5. Sam_g27161

Sam_g27161


Description : component *(DSP4) of DSP snRNA processing complex & original description: none


Gene families : OG0006992 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006992_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g27161

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01000827001 No alias No description available 0.02 OrthoFinder output from all 47 species
LOC_Os03g13960.2 LOC_Os03g13960 component DSP4 of DSP snRNA processing complex 0.02 OrthoFinder output from all 47 species
Lfl_g10333 No alias component *(DSP4) of DSP snRNA processing complex &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001279 Metallo-B-lactamas 143 290
No external refs found!