Sam_g27047

Description : component *(eS19) of small ribosomal-subunit (SSU) proteome & original description: none

Gene families : OG0000873 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000873_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g27047
Cluster	HCCA: Cluster_21

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00045p00207750	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	OrthoFinder output from all 47 species
AMTR_s00110p00069670	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	OrthoFinder output from all 47 species
AT3G02080	No alias	Ribosomal protein S19e family protein	0.05	OrthoFinder output from all 47 species
AT5G61170	No alias	Ribosomal protein S19e family protein	0.07	OrthoFinder output from all 47 species
Adi_g019924	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Adi_g122694	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Adi_g125842	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ala_g20886	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Als_g06716	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Als_g16944	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Als_g44683	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Aop_g00927	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Aop_g14490	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Aop_g57031	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Aspi01Gene53442.t1	Aspi01Gene53442	component *(eS19) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Azfi_s0007.g011210	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021017.6	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	OrthoFinder output from all 47 species
Cre02.g106600	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.05	OrthoFinder output from all 47 species
Dac_g22936	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Dac_g28531	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Dcu_g21083	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Dcu_g29784	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Dcu_g30993	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Ehy_g06282	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
GSVIVT01007908001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.05	OrthoFinder output from all 47 species
GSVIVT01012199001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.08	OrthoFinder output from all 47 species
Gb_40460	No alias	component RPS19 of SSU proteome	0.05	OrthoFinder output from all 47 species
LOC_Os03g31090.1	LOC_Os03g31090	component RPS19 of SSU proteome	0.05	OrthoFinder output from all 47 species
Lfl_g31872	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
MA_10427917g0010	No alias	component RPS19 of SSU proteome	0.04	OrthoFinder output from all 47 species
MA_7685779g0010	No alias	component RPS19 of SSU proteome	0.02	OrthoFinder output from all 47 species
MA_9301411g0010	No alias	component RPS19 of SSU proteome	0.02	OrthoFinder output from all 47 species
Mp1g27380.1	No alias	component RPS19 of SSU proteome	0.05	OrthoFinder output from all 47 species
Msp_g22057	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Msp_g43925	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Ore_g34855	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Pir_g00273	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Pp3c14_19640V3.1	Pp3c14_19640	Ribosomal protein S19e family protein	0.02	OrthoFinder output from all 47 species
Pp3c17_15200V3.1	Pp3c17_15200	Ribosomal protein S19e family protein	0.02	OrthoFinder output from all 47 species
Pp3c1_28780V3.1	Pp3c1_28780	Ribosomal protein S19e family protein	0.04	OrthoFinder output from all 47 species
Pp3c27_2780V3.1	Pp3c27_2780	Ribosomal protein S19e family protein	0.03	OrthoFinder output from all 47 species
Pp3c2_10060V3.1	Pp3c2_10060	Ribosomal protein S19e family protein	0.02	OrthoFinder output from all 47 species
Ppi_g00396	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ppi_g26502	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Ppi_g28479	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Ppi_g41385	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Ppi_g50718	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Sam_g12907	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Sam_g14851	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.09	OrthoFinder output from all 47 species
Sam_g18468	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Sam_g22603	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Sam_g22812	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.09	OrthoFinder output from all 47 species
Sam_g30614	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Sam_g31814	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Sam_g42204	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Sam_g46027	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Smo153225	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
Solyc03g115360.3.1	Solyc03g115360	component RPS19 of SSU proteome	0.06	OrthoFinder output from all 47 species
Solyc12g039120.2.1	Solyc12g039120	component RPS19 of SSU proteome	0.06	OrthoFinder output from all 47 species
Spa_g11663	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Spa_g41565	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Spa_g43576	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Tin_g14125	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Zm00001e002011_P001	Zm00001e002011	component RPS19 of SSU proteome	0.06	OrthoFinder output from all 47 species
Zm00001e038053_P003	Zm00001e038053	component RPS19 of SSU proteome	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
CC	GO:0044391	ribosomal subunit	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001266	Ribosomal_S19e	8	143

External Links

No external refs found!

Sam_g27047

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation