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  5. Sam_g26599

Sam_g26599


Description : floral promoter *(CONSTANS) & original description: none


Gene families : OG0001141 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001141_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g26599
Cluster HCCA: Cluster_161

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00262710 COL2, ATCOL2,... RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
AT3G02380 COL2, ATCOL2 CONSTANS-like 2 0.03 OrthoFinder output from all 47 species
AT5G15850 COL1, ATCOL1 CONSTANS-like 1 0.04 OrthoFinder output from all 47 species
Als_g13330 ATCOL4, COL4 floral promoter *(CONSTANS) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g17369 ATCOL4, COL4 floral promoter *(CONSTANS) & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0006.g009656 ATCOL4, COL4 floral promoter *(CONSTANS) & original description: CDS=186-1232 0.05 OrthoFinder output from all 47 species
Ceric.20G041500.1 ATCOL4, COL4,... floral promoter *(CONSTANS) & original description:... 0.02 OrthoFinder output from all 47 species
Cre06.g278159 ATCOL5, COL5 Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Cre12.g534100 COL2, ATCOL2 No description available 0.02 OrthoFinder output from all 47 species
Dcu_g08689 ATCOL4, COL4 floral promoter *(CONSTANS) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01029107001 ATCOL5, COL5 Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01036037001 ATCOL4, COL4 RNA biosynthesis.transcriptional activation.C2C2... 0.02 OrthoFinder output from all 47 species
GSVIVT01036499001 COL2, ATCOL2 RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
LOC_Os02g39710.1 ATCOL5, COL5,... transcription factor (BBX-CO) 0.02 OrthoFinder output from all 47 species
LOC_Os04g42020.1 ATCOL5, COL5,... transcription factor (BBX-CO) 0.02 OrthoFinder output from all 47 species
LOC_Os06g44450.1 ATCOL5, COL5,... Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os08g15050.1 ATCOL5, COL5,... no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os09g06464.1 COL2, ATCOL2,... Zinc finger protein CO3 OS=Oryza sativa subsp. japonica... 0.04 OrthoFinder output from all 47 species
LOC_Os10g41100.1 ATCOL5, COL5,... Transcription factor GHD7 OS=Oryza sativa subsp.... 0.03 OrthoFinder output from all 47 species
Lfl_g05304 ATCOL4, COL4 floral promoter *(CONSTANS) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g34612 ATCOL4, COL4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g48282 COL1, ATCOL1 floral promoter *(CONSTANS) & original description: none 0.02 OrthoFinder output from all 47 species
Smo185898 ATCOL4, COL4 RNA biosynthesis.transcriptional activation.C2C2... 0.04 OrthoFinder output from all 47 species
Solyc02g089540.3.1 COL2, ATCOL2,... transcription factor (BBX-CO) 0.04 OrthoFinder output from all 47 species
Solyc12g096500.2.1 ATCOL4, COL4,... transcription factor (BBX-CO) 0.04 OrthoFinder output from all 47 species
Spa_g06395 ATCOL4, COL4 floral promoter *(CONSTANS) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e002319_P001 ATCOL4, COL4,... Transcription factor GHD7 OS=Oryza sativa subsp.... 0.03 OrthoFinder output from all 47 species
Zm00001e007691_P001 Zm00001e007691 transcription factor (BBX-CO) 0.02 OrthoFinder output from all 47 species
Zm00001e037706_P002 ATCOL5, COL5,... Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e037873_P001 ATCOL4, COL4,... no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e041152_P001 ATCOL5, COL5,... transcription factor (BBX-CO) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
MF GO:0016161 beta-amylase activity IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000315 Znf_B-box 45 90
IPR000315 Znf_B-box 4 44
IPR010402 CCT_domain 297 339
No external refs found!