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  5. Sam_g26598

Sam_g26598


Description : floral promoter *(CONSTANS) & original description: none


Gene families : OG0001141 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001141_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g26598

Target Alias Description ECC score Gene Family Method Actions
AT3G02380 COL2, ATCOL2 CONSTANS-like 2 0.03 OrthoFinder output from all 47 species
AT5G15850 COL1, ATCOL1 CONSTANS-like 1 0.03 OrthoFinder output from all 47 species
Ceric.20G041500.1 ATCOL4, COL4,... floral promoter *(CONSTANS) & original description:... 0.02 OrthoFinder output from all 47 species
Ehy_g22951 ATCOL4, COL4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01029107001 ATCOL5, COL5 Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os02g08150.1 ATCOL5, COL5,... Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os02g39710.1 ATCOL5, COL5,... transcription factor (BBX-CO) 0.02 OrthoFinder output from all 47 species
LOC_Os06g44450.1 ATCOL5, COL5,... Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Smo185898 ATCOL4, COL4 RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
Solyc02g089540.3.1 COL2, ATCOL2,... transcription factor (BBX-CO) 0.03 OrthoFinder output from all 47 species
Zm00001e007691_P001 Zm00001e007691 transcription factor (BBX-CO) 0.03 OrthoFinder output from all 47 species
Zm00001e037873_P001 ATCOL4, COL4,... no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e041152_P001 ATCOL5, COL5,... transcription factor (BBX-CO) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008289 lipid binding IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
InterPro domains Description Start Stop
IPR010402 CCT_domain 297 339
IPR000315 Znf_B-box 45 90
IPR000315 Znf_B-box 4 44
No external refs found!