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  5. Sam_g26426

Sam_g26426


Description : not classified & original description: none


Gene families : OG0000608 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000608_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g26426

Target Alias Description ECC score Gene Family Method Actions
Adi_g020043 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.02 OrthoFinder output from all 47 species
Adi_g107381 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.03 OrthoFinder output from all 47 species
Als_g26663 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g02092 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g06975 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene56013.t1 Aspi01Gene56013 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.25G050300.1 Ceric.25G050300 not classified & original description: pacid=50593449... 0.02 OrthoFinder output from all 47 species
Dcu_g19294 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g19632 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.03 OrthoFinder output from all 47 species
Gb_04152 No alias La-related protein 1C OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Len_g33274 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g02402 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g65901 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g10149 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc06g073550.3.1 Solyc06g073550 XRN4-exoribonuclease cofactor (LARP1) 0.02 OrthoFinder output from all 47 species
Spa_g46596 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g50019 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005516 calmodulin binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
CC GO:0017119 Golgi transport complex IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR006630 La_HTH 381 436
No external refs found!