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  5. Sam_g26374

Sam_g26374


Description : substrate binding component *(TGD2) of TGD lipid importer complex & original description: none


Gene families : OG0002728 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002728_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g26374

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0072.g036947 TGD2 substrate binding component *(TGD2) of TGD lipid... 0.04 OrthoFinder output from all 47 species
Cba_g78288 TGD2 substrate binding component *(TGD2) of TGD lipid... 0.03 OrthoFinder output from all 47 species
Len_g03263 TGD2 substrate binding component *(TGD2) of TGD lipid... 0.04 OrthoFinder output from all 47 species
Lfl_g06478 TGD2 substrate binding component *(TGD2) of TGD lipid... 0.03 OrthoFinder output from all 47 species
MA_10434063g0010 TGD2 substrate binding component TGD2 of TGD lipid importer complex 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0234.g026505 TGD2 substrate binding component *(TGD2) of TGD lipid... 0.03 OrthoFinder output from all 47 species
Solyc02g082030.3.1 TGD2, Solyc02g082030 substrate binding component TGD2 of TGD lipid importer complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003879 ATP phosphoribosyltransferase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006547 histidine metabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR003399 Mce/MlaD 120 195
No external refs found!