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  5. Sam_g26028

Sam_g26028


Description : 23S-rRNA maturation helicase *(RH39) & original description: none


Gene families : OG0007220 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007220_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g26028

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00078p00161460 RH39,... DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
AT4G09730 RH39 RH39 0.02 OrthoFinder output from all 47 species
Adi_g006743 RH39 23S-rRNA maturation helicase *(RH39) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g22528 RH39 23S-rRNA maturation helicase *(RH39) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g15873 RH39 23S-rRNA maturation helicase *(RH39) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g04355 RH39 23S-rRNA maturation helicase *(RH39) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0006.g009538 RH39 23S-rRNA maturation helicase *(RH39) & original... 0.03 OrthoFinder output from all 47 species
Dac_g01704 RH39 23S-rRNA maturation helicase *(RH39) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g26269 RH39 23S-rRNA maturation helicase *(RH39) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01013702001 RH39 DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Gb_33379 RH39 DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Len_g18944 RH39 23S-rRNA maturation helicase *(RH39) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g38704 RH39 23S-rRNA maturation helicase *(RH39) & original description: none 0.02 OrthoFinder output from all 47 species
MA_12327g0010 RH39 DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Mp5g09580.1 RH39 DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.01 OrthoFinder output from all 47 species
Nbi_g37282 RH39 23S-rRNA maturation helicase *(RH39) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g14534 RH39 23S-rRNA maturation helicase *(RH39) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e029916_P001 RH39, Zm00001e029916 DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004357 glutamate-cysteine ligase activity IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006575 cellular modified amino acid metabolic process IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
CC GO:0030880 RNA polymerase complex IEP HCCA
BP GO:0042398 cellular modified amino acid biosynthetic process IEP HCCA
MF GO:0043021 ribonucleoprotein complex binding IEP HCCA
MF GO:0043022 ribosome binding IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 145 327
IPR001650 Helicase_C 364 475
No external refs found!