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  5. Sam_g26003

Sam_g26003


Description : PLATZ-type transcription factor & original description: none


Gene families : OG0000228 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000228_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g26003
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00208550 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.PLATZ... 0.02 OrthoFinder output from all 47 species
AMTR_s00059p00116150 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.PLATZ... 0.02 OrthoFinder output from all 47 species
Aev_g12654 No alias PLATZ-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g57143 No alias PLATZ-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0190.g056920 No alias PLATZ-type transcription factor & original description: CDS=1-966 0.02 OrthoFinder output from all 47 species
Azfi_s0246.g060041 No alias PLATZ-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
GSVIVT01012125001 No alias RNA biosynthesis.transcriptional activation.PLATZ... 0.02 OrthoFinder output from all 47 species
GSVIVT01012869001 No alias RNA biosynthesis.transcriptional activation.PLATZ... 0.02 OrthoFinder output from all 47 species
GSVIVT01031446001 No alias RNA biosynthesis.transcriptional activation.PLATZ... 0.02 OrthoFinder output from all 47 species
Ore_g09290 No alias PLATZ-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g20268 No alias PLATZ-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g41201 No alias PLATZ-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g01265 No alias PLATZ-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c13_11088V3.1 Pp3c13_11088 No annotation 0.01 OrthoFinder output from all 47 species
Solyc08g076860.3.1 Solyc08g076860 transcription factor (PLATZ) 0.02 OrthoFinder output from all 47 species
Tin_g09888 No alias PLATZ-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005216 monoatomic ion channel activity IEP HCCA
BP GO:0006914 autophagy IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
BP GO:0061919 process utilizing autophagic mechanism IEP HCCA
CC GO:1902554 serine/threonine protein kinase complex IEP HCCA
CC GO:1902911 protein kinase complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
CC GO:1990316 Atg1/ULK1 kinase complex IEP HCCA
InterPro domains Description Start Stop
IPR006734 PLATZ 104 175
No external refs found!