Sam_g25995


Description : PHD finger transcription factor & original description: none


Gene families : OG0003668 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003668_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g25995

Target Alias Description ECC score Gene Family Method Actions
AT5G35210 No alias metalloendopeptidases;zinc ion binding;DNA binding 0.05 OrthoFinder output from all 47 species
Aspi01Gene10761.t1 Aspi01Gene10761 PHD finger transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene36311.t1 Aspi01Gene36311 PHD finger transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g45860 No alias PHD finger transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01037231001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.02 OrthoFinder output from all 47 species
LOC_Os07g46690.1 LOC_Os07g46690 PHD finger transcription factor 0.02 OrthoFinder output from all 47 species
LOC_Os11g05130.1 LOC_Os11g05130 PHD finger transcription factor 0.02 OrthoFinder output from all 47 species
Lfl_g05757 No alias PHD finger transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Mp4g03480.1 No alias PHD finger transcription factor 0.03 OrthoFinder output from all 47 species
Ppi_g03291 No alias PHD finger transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003692 No alias PHD finger transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Smo441144 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.02 OrthoFinder output from all 47 species
Solyc11g065160.3.1 Solyc11g065160 PHD finger transcription factor 0.03 OrthoFinder output from all 47 species
Zm00001e035778_P001 Zm00001e035778 PHD finger transcription factor 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 474 517
IPR018501 DDT_dom 259 312
No external refs found!